Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4229.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,053,356	+		Xcc-8004.4227.1	0.45	-0.4
4,053,421	+		Xcc-8004.4227.1	0.57	-0.2
4,053,422	-		Xcc-8004.4227.1	0.57	+0.3
4,053,422	-		Xcc-8004.4227.1	0.57	+0.5
4,053,597	+		Xcc-8004.4227.1	0.88	-1.1
4,053,597	+		Xcc-8004.4227.1	0.88	+1.8
4,053,597	+		Xcc-8004.4227.1	0.88	-1.0
4,053,598	-		Xcc-8004.4227.1	0.88	-0.4
4,053,598	-		Xcc-8004.4227.1	0.88	-0.1
4,053,624	-				+0.0
4,053,624	-				-0.3
4,053,710	+		Xcc-8004.4228.1	0.44	+0.2
4,053,712	+		Xcc-8004.4228.1	0.45	+0.4
4,053,712	+		Xcc-8004.4228.1	0.45	+1.4
4,053,713	-		Xcc-8004.4228.1	0.45	-1.2
4,053,869	+				-0.3
4,053,870	-				-0.2
4,053,870	-				-0.7
4,053,870	-				-0.2
4,053,900	+				+0.1
4,054,064	+				-0.3
4,054,131	+				+0.0
4,054,243	+				-0.2
4,054,244	-				-1.0
4,054,267	+		Xcc-8004.4229.1	0.12	-0.0
4,054,267	+		Xcc-8004.4229.1	0.12	-0.2
4,054,268	-		Xcc-8004.4229.1	0.12	-0.7
4,054,268	-		Xcc-8004.4229.1	0.12	-0.6
4,054,291	+		Xcc-8004.4229.1	0.15	+0.4
4,054,291	+		Xcc-8004.4229.1	0.15	-0.4
4,054,294	+		Xcc-8004.4229.1	0.16	-0.1
4,054,294	+		Xcc-8004.4229.1	0.16	+1.2
4,054,294	+		Xcc-8004.4229.1	0.16	-0.5
4,054,294	+		Xcc-8004.4229.1	0.16	-1.3
4,054,295	-		Xcc-8004.4229.1	0.16	+0.1
4,054,295	-		Xcc-8004.4229.1	0.16	-1.2
4,054,295	-		Xcc-8004.4229.1	0.16	+0.5
4,054,295	-		Xcc-8004.4229.1	0.16	-2.1
4,054,295	-		Xcc-8004.4229.1	0.16	+0.4
4,054,295	-		Xcc-8004.4229.1	0.16	-0.0
4,054,295	-		Xcc-8004.4229.1	0.16	-0.1
4,054,366	+		Xcc-8004.4229.1	0.27	-0.1
4,054,366	+		Xcc-8004.4229.1	0.27	+0.1
4,054,367	-		Xcc-8004.4229.1	0.27	-0.7
4,054,396	+		Xcc-8004.4229.1	0.31	-0.1
4,054,397	-		Xcc-8004.4229.1	0.32	-0.6
4,054,397	-		Xcc-8004.4229.1	0.32	-0.9
4,054,417	+		Xcc-8004.4229.1	0.35	+0.5
4,054,417	+		Xcc-8004.4229.1	0.35	+0.6
4,054,417	+		Xcc-8004.4229.1	0.35	+2.1
4,054,418	-		Xcc-8004.4229.1	0.35	-0.7
4,054,432	+		Xcc-8004.4229.1	0.37	-0.3
4,054,534	+		Xcc-8004.4229.1	0.53	-1.3
4,054,534	+		Xcc-8004.4229.1	0.53	+0.9
4,054,535	-		Xcc-8004.4229.1	0.53	-0.6
4,054,535	-		Xcc-8004.4229.1	0.53	-1.3
4,054,636	+		Xcc-8004.4229.1	0.68	-0.1
4,054,636	+		Xcc-8004.4229.1	0.68	+0.0
4,054,636	+		Xcc-8004.4229.1	0.68	-0.8
4,054,637	-		Xcc-8004.4229.1	0.69	-1.0
4,054,637	-		Xcc-8004.4229.1	0.69	-0.6
4,054,637	-		Xcc-8004.4229.1	0.69	+0.3
4,054,778	+				+0.5
4,054,779	-				+0.3
4,055,455	-				+1.3
4,055,455	-				-0.7
4,055,455	-				-0.1
4,055,455	-				-0.5
4,055,455	-				-0.3
4,055,455	-				-0.5
4,055,538	+				-0.1
4,055,538	+				+0.5
4,055,538	+				-1.1
4,055,538	+				+0.6
4,055,538	+				-1.3
4,055,538	+				-0.4
4,055,538	+				+0.7
4,055,538	+				+0.3
4,055,539	-				+0.4
4,055,539	-				+1.9
4,055,539	-				+1.1
4,055,539	-				+0.2
4,055,539	-				+0.0
4,055,539	-				-0.5
4,055,539	-				+0.4
4,055,540	+				-2.4
4,055,540	+				+0.6
4,055,540	+				+0.8
4,055,540	+				+0.8
4,055,541	-				+0.7
4,055,548	+				+0.0
4,055,548	+				+0.5
4,055,548	+				+1.1
4,055,549	-				-0.9
4,055,549	-				-1.2
4,055,549	-				-0.4
4,055,563	-				+0.1
4,055,614	+				-0.4
4,055,615	-				+0.4
4,055,687	+		Xcc-8004.4231.1	0.16	-0.9