Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3760.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3757.1 and Xcc-8004.3759.1 are separated by 260 nucleotidesXcc-8004.3759.1 and Xcc-8004.3760.1 overlap by 67 nucleotidesXcc-8004.3760.1 and Xcc-8004.3761.1 are separated by 519 nucleotides Xcc-8004.3757.1: Xcc-8004.3757.1 - Mobile element protein, at 3,628,781 to 3,629,743 Xcc-8004.3757.1 Xcc-8004.3759.1: Xcc-8004.3759.1 - hypothetical protein, at 3,630,004 to 3,630,723 Xcc-8004.3759.1 Xcc-8004.3760.1: Xcc-8004.3760.1 - DNA mismatch repair protein MutS, at 3,630,657 to 3,633,278 Xcc-8004.3760.1 Xcc-8004.3761.1: Xcc-8004.3761.1 - FIG01211233: hypothetical protein, at 3,633,798 to 3,634,412 Xcc-8004.3761.1 Position (kb) 3630 3631 3632 3633 3634Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3629.948 kb on + strandat 3629.949 kb on - strandat 3629.985 kb on - strandat 3629.985 kb on - strandat 3630.077 kb on + strand, within Xcc-8004.3759.1at 3630.098 kb on + strand, within Xcc-8004.3759.1at 3630.099 kb on - strand, within Xcc-8004.3759.1at 3630.101 kb on + strand, within Xcc-8004.3759.1at 3630.102 kb on - strand, within Xcc-8004.3759.1at 3630.123 kb on - strand, within Xcc-8004.3759.1at 3630.375 kb on - strand, within Xcc-8004.3759.1at 3630.793 kb on - strandat 3630.910 kb on - strandat 3630.910 kb on - strandat 3630.910 kb on - strandat 3630.918 kb on + strandat 3630.918 kb on + strandat 3630.918 kb on + strandat 3630.919 kb on - strandat 3631.216 kb on + strand, within Xcc-8004.3760.1at 3631.216 kb on + strand, within Xcc-8004.3760.1at 3631.216 kb on + strand, within Xcc-8004.3760.1at 3631.217 kb on - strand, within Xcc-8004.3760.1at 3631.217 kb on - strand, within Xcc-8004.3760.1at 3631.217 kb on - strand, within Xcc-8004.3760.1at 3631.410 kb on + strand, within Xcc-8004.3760.1at 3631.410 kb on + strand, within Xcc-8004.3760.1at 3631.410 kb on + strand, within Xcc-8004.3760.1at 3631.411 kb on - strand, within Xcc-8004.3760.1at 3631.411 kb on - strand, within Xcc-8004.3760.1at 3631.411 kb on - strand, within Xcc-8004.3760.1at 3631.642 kb on + strand, within Xcc-8004.3760.1at 3631.869 kb on + strand, within Xcc-8004.3760.1at 3631.974 kb on + strand, within Xcc-8004.3760.1at 3632.106 kb on + strand, within Xcc-8004.3760.1at 3632.107 kb on - strand, within Xcc-8004.3760.1at 3632.109 kb on + strand, within Xcc-8004.3760.1at 3632.109 kb on + strand, within Xcc-8004.3760.1at 3632.109 kb on + strand, within Xcc-8004.3760.1at 3632.110 kb on - strand, within Xcc-8004.3760.1at 3632.110 kb on - strand, within Xcc-8004.3760.1at 3632.110 kb on - strand, within Xcc-8004.3760.1at 3632.154 kb on + strand, within Xcc-8004.3760.1at 3632.191 kb on - strand, within Xcc-8004.3760.1at 3632.272 kb on - strand, within Xcc-8004.3760.1at 3632.556 kb on + strand, within Xcc-8004.3760.1at 3632.556 kb on + strand, within Xcc-8004.3760.1at 3632.557 kb on - strand, within Xcc-8004.3760.1at 3632.557 kb on - strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.604 kb on + strand, within Xcc-8004.3760.1at 3632.605 kb on - strand, within Xcc-8004.3760.1at 3632.605 kb on - strand, within Xcc-8004.3760.1at 3632.605 kb on - strand, within Xcc-8004.3760.1at 3632.605 kb on - strand, within Xcc-8004.3760.1at 3632.605 kb on - strand, within Xcc-8004.3760.1at 3632.605 kb on - strand, within Xcc-8004.3760.1at 3632.608 kb on + strand, within Xcc-8004.3760.1at 3632.608 kb on + strand, within Xcc-8004.3760.1at 3632.609 kb on - strand, within Xcc-8004.3760.1at 3632.724 kb on + strand, within Xcc-8004.3760.1at 3632.724 kb on + strand, within Xcc-8004.3760.1at 3632.793 kb on + strand, within Xcc-8004.3760.1at 3632.793 kb on + strand, within Xcc-8004.3760.1at 3632.793 kb on + strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.794 kb on - strand, within Xcc-8004.3760.1at 3632.853 kb on + strand, within Xcc-8004.3760.1at 3632.853 kb on + strand, within Xcc-8004.3760.1at 3632.854 kb on - strand, within Xcc-8004.3760.1at 3632.874 kb on + strand, within Xcc-8004.3760.1at 3632.874 kb on + strand, within Xcc-8004.3760.1at 3632.874 kb on + strand, within Xcc-8004.3760.1at 3633.255 kb on + strandat 3633.355 kb on + strandat 3633.356 kb on - strandat 3633.356 kb on - strandat 3633.405 kb on + strandat 3633.405 kb on + strandat 3633.406 kb on - strandat 3633.406 kb on - strandat 3633.427 kb on + strandat 3633.428 kb on - strandat 3633.468 kb on + strandat 3633.469 kb on - strandat 3633.560 kb on + strandat 3633.560 kb on + strandat 3633.560 kb on + strandat 3633.561 kb on - strandat 3633.585 kb on + strandat 3633.585 kb on + strandat 3633.585 kb on + strandat 3633.585 kb on + strandat 3633.586 kb on - strandat 3633.618 kb on + strandat 3633.618 kb on + strandat 3633.618 kb on + strandat 3633.619 kb on - strandat 3633.619 kb on - strandat 3633.713 kb on + strandat 3634.212 kb on + strand, within Xcc-8004.3761.1at 3634.212 kb on + strand, within Xcc-8004.3761.1at 3634.212 kb on + strand, within Xcc-8004.3761.1at 3634.212 kb on + strand, within Xcc-8004.3761.1at 3634.212 kb on + strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1at 3634.213 kb on - strand, within Xcc-8004.3761.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,629,948 + -0.1
3,629,949 - +0.3
3,629,985 - -0.4
3,629,985 - +2.1
3,630,077 + Xcc-8004.3759.1 0.10 -1.9
3,630,098 + Xcc-8004.3759.1 0.13 +0.3
3,630,099 - Xcc-8004.3759.1 0.13 -0.9
3,630,101 + Xcc-8004.3759.1 0.13 -2.2
3,630,102 - Xcc-8004.3759.1 0.14 +0.6
3,630,123 - Xcc-8004.3759.1 0.17 -0.4
3,630,375 - Xcc-8004.3759.1 0.52 +2.5
3,630,793 - +0.2
3,630,910 - +0.0
3,630,910 - -0.8
3,630,910 - -0.1
3,630,918 + -0.8
3,630,918 + +0.0
3,630,918 + -0.2
3,630,919 - -0.2
3,631,216 + Xcc-8004.3760.1 0.21 -0.0
3,631,216 + Xcc-8004.3760.1 0.21 -1.0
3,631,216 + Xcc-8004.3760.1 0.21 +0.6
3,631,217 - Xcc-8004.3760.1 0.21 +0.2
3,631,217 - Xcc-8004.3760.1 0.21 +0.8
3,631,217 - Xcc-8004.3760.1 0.21 -1.0
3,631,410 + Xcc-8004.3760.1 0.29 +2.7
3,631,410 + Xcc-8004.3760.1 0.29 +0.5
3,631,410 + Xcc-8004.3760.1 0.29 -1.5
3,631,411 - Xcc-8004.3760.1 0.29 +0.9
3,631,411 - Xcc-8004.3760.1 0.29 +0.1
3,631,411 - Xcc-8004.3760.1 0.29 +0.3
3,631,642 + Xcc-8004.3760.1 0.38 -0.2
3,631,869 + Xcc-8004.3760.1 0.46 +0.1
3,631,974 + Xcc-8004.3760.1 0.50 +1.4
3,632,106 + Xcc-8004.3760.1 0.55 +0.5
3,632,107 - Xcc-8004.3760.1 0.55 +0.0
3,632,109 + Xcc-8004.3760.1 0.55 -0.2
3,632,109 + Xcc-8004.3760.1 0.55 +0.3
3,632,109 + Xcc-8004.3760.1 0.55 +0.8
3,632,110 - Xcc-8004.3760.1 0.55 +0.6
3,632,110 - Xcc-8004.3760.1 0.55 +0.9
3,632,110 - Xcc-8004.3760.1 0.55 -1.2
3,632,154 + Xcc-8004.3760.1 0.57 +2.8
3,632,191 - Xcc-8004.3760.1 0.59 +0.2
3,632,272 - Xcc-8004.3760.1 0.62 +0.6
3,632,556 + Xcc-8004.3760.1 0.72 +1.3
3,632,556 + Xcc-8004.3760.1 0.72 -1.7
3,632,557 - Xcc-8004.3760.1 0.72 +0.6
3,632,557 - Xcc-8004.3760.1 0.72 -0.7
3,632,604 + Xcc-8004.3760.1 0.74 +0.3
3,632,604 + Xcc-8004.3760.1 0.74 +1.7
3,632,604 + Xcc-8004.3760.1 0.74 -0.6
3,632,604 + Xcc-8004.3760.1 0.74 +2.3
3,632,604 + Xcc-8004.3760.1 0.74 -1.7
3,632,604 + Xcc-8004.3760.1 0.74 +0.3
3,632,604 + Xcc-8004.3760.1 0.74 -0.1
3,632,605 - Xcc-8004.3760.1 0.74 +0.0
3,632,605 - Xcc-8004.3760.1 0.74 +0.5
3,632,605 - Xcc-8004.3760.1 0.74 +0.7
3,632,605 - Xcc-8004.3760.1 0.74 -0.9
3,632,605 - Xcc-8004.3760.1 0.74 +0.5
3,632,605 - Xcc-8004.3760.1 0.74 +2.1
3,632,608 + Xcc-8004.3760.1 0.74 +0.8
3,632,608 + Xcc-8004.3760.1 0.74 -0.1
3,632,609 - Xcc-8004.3760.1 0.74 +1.3
3,632,724 + Xcc-8004.3760.1 0.79 -0.2
3,632,724 + Xcc-8004.3760.1 0.79 -0.2
3,632,793 + Xcc-8004.3760.1 0.81 -0.3
3,632,793 + Xcc-8004.3760.1 0.81 +0.2
3,632,793 + Xcc-8004.3760.1 0.81 -0.2
3,632,794 - Xcc-8004.3760.1 0.82 -0.0
3,632,794 - Xcc-8004.3760.1 0.82 +0.4
3,632,794 - Xcc-8004.3760.1 0.82 +0.1
3,632,794 - Xcc-8004.3760.1 0.82 +0.7
3,632,794 - Xcc-8004.3760.1 0.82 +0.0
3,632,794 - Xcc-8004.3760.1 0.82 -0.2
3,632,794 - Xcc-8004.3760.1 0.82 +0.5
3,632,853 + Xcc-8004.3760.1 0.84 +0.7
3,632,853 + Xcc-8004.3760.1 0.84 -0.1
3,632,854 - Xcc-8004.3760.1 0.84 +0.5
3,632,874 + Xcc-8004.3760.1 0.85 -1.2
3,632,874 + Xcc-8004.3760.1 0.85 -0.7
3,632,874 + Xcc-8004.3760.1 0.85 -0.2
3,633,255 + -1.6
3,633,355 + -0.4
3,633,356 - -0.3
3,633,356 - +0.1
3,633,405 + -0.6
3,633,405 + +1.5
3,633,406 - -0.0
3,633,406 - -0.1
3,633,427 + -2.2
3,633,428 - +0.1
3,633,468 + +0.8
3,633,469 - -0.7
3,633,560 + +0.2
3,633,560 + +1.0
3,633,560 + +0.4
3,633,561 - -0.7
3,633,585 + +0.3
3,633,585 + -0.9
3,633,585 + -0.2
3,633,585 + -0.3
3,633,586 - -0.7
3,633,618 + -0.8
3,633,618 + -1.6
3,633,618 + -1.4
3,633,619 - -0.3
3,633,619 - +1.4
3,633,713 + -0.0
3,634,212 + Xcc-8004.3761.1 0.67 -1.0
3,634,212 + Xcc-8004.3761.1 0.67 +0.5
3,634,212 + Xcc-8004.3761.1 0.67 +0.9
3,634,212 + Xcc-8004.3761.1 0.67 -0.1
3,634,212 + Xcc-8004.3761.1 0.67 -0.5
3,634,213 - Xcc-8004.3761.1 0.67 +0.9
3,634,213 - Xcc-8004.3761.1 0.67 +0.3
3,634,213 - Xcc-8004.3761.1 0.67 -1.2
3,634,213 - Xcc-8004.3761.1 0.67 +0.3
3,634,213 - Xcc-8004.3761.1 0.67 +0.4
3,634,213 - Xcc-8004.3761.1 0.67 -0.0
3,634,213 - Xcc-8004.3761.1 0.67 +1.2
3,634,213 - Xcc-8004.3761.1 0.67 +0.6
3,634,213 - Xcc-8004.3761.1 0.67 -0.3

Or see this region's nucleotide sequence