Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1866

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1863 and ihfB are separated by 74 nucleotidesihfB and DVU1865 overlap by 14 nucleotidesDVU1865 and DVU1866 are separated by 51 nucleotidesDVU1866 and dapF are separated by 25 nucleotidesdapF and dapA are separated by 55 nucleotides DVU1863: DVU1863 - flagellar synthesis regulator FleN, putative (TIGR), at 1,930,440 to 1,931,258 DVU1863 DVU1864: ihfB - DNA-binding protein HU, beta subunit, putative (TIGR), at 1,931,333 to 1,931,614 ihfB DVU1865: DVU1865 - hypothetical protein (TIGR), at 1,931,601 to 1,931,741 DVU1865 DVU1866: DVU1866 - hypothetical protein (TIGR), at 1,931,793 to 1,932,494 DVU1866 DVU1867: dapF - diaminopimelate epimerase (TIGR), at 1,932,520 to 1,933,368 dapF DVU1868: dapA - dihydrodipicolinate synthase (TIGR), at 1,933,424 to 1,934,302 dapA Position (kb) 1931 1932 1933Strain fitness (log2 ratio) -2 -1 0 1at 1930.909 kb on + strand, within DVU1863at 1930.927 kb on - strand, within DVU1863at 1931.078 kb on + strand, within DVU1863at 1931.090 kb on + strand, within DVU1863at 1931.204 kb on - strandat 1931.252 kb on + strandat 1931.329 kb on - strandat 1931.350 kb on + strandat 1931.608 kb on + strandat 1931.729 kb on - strandat 1931.773 kb on + strandat 1931.864 kb on + strand, within DVU1866at 1932.025 kb on + strand, within DVU1866at 1932.151 kb on - strand, within DVU1866at 1932.161 kb on - strand, within DVU1866at 1932.174 kb on + strand, within DVU1866at 1932.246 kb on + strand, within DVU1866at 1932.374 kb on - strand, within DVU1866at 1932.466 kb on + strandat 1932.511 kb on - strandat 1933.332 kb on + strandat 1933.360 kb on - strandat 1933.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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1,930,909 + DVU1863 0.57 -0.2
1,930,927 - DVU1863 0.59 -0.0
1,931,078 + DVU1863 0.78 -0.3
1,931,090 + DVU1863 0.79 -0.2
1,931,204 - -1.7
1,931,252 + -0.2
1,931,329 - +0.1
1,931,350 + +1.7
1,931,608 + -1.9
1,931,729 - -0.2
1,931,773 + -0.3
1,931,864 + DVU1866 0.10 -0.2
1,932,025 + DVU1866 0.33 +0.1
1,932,151 - DVU1866 0.51 -0.3
1,932,161 - DVU1866 0.52 -0.0
1,932,174 + DVU1866 0.54 +0.7
1,932,246 + DVU1866 0.65 +0.1
1,932,374 - DVU1866 0.83 +0.2
1,932,466 + -0.4
1,932,511 - -1.6
1,933,332 + -0.2
1,933,360 - -0.3
1,933,362 + -0.4

Or see this region's nucleotide sequence