Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1748.1 and Xcc-8004.1749.1 are separated by 281 nucleotides Xcc-8004.1749.1 and Xcc-8004.1750.1 are separated by 127 nucleotides Xcc-8004.1750.1 and Xcc-8004.1751.1 are separated by 161 nucleotides
Xcc-8004.1748.1: Xcc-8004.1748.1 - hypothetical protein, at 1,680,183 to 1,680,278
Xcc-8004.1748.1
Xcc-8004.1749.1: Xcc-8004.1749.1 - FIG01212324: hypothetical protein, at 1,680,560 to 1,680,775
Xcc-8004.1749.1
Xcc-8004.1750.1: Xcc-8004.1750.1 - DUF819 domain-containing protein, at 1,680,903 to 1,682,291
Xcc-8004.1750.1
Xcc-8004.1751.1: Xcc-8004.1751.1 - phospholipase A1, at 1,682,453 to 1,683,649
Xcc-8004.1751.1
Position (kb) 1680
1681
1682
1683 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1679.912 kb on + strand at 1679.913 kb on - strand at 1680.039 kb on - strand at 1680.039 kb on - strand at 1680.039 kb on - strand at 1680.057 kb on + strand at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.223 kb on + strand, within Xcc-8004.1748.1 at 1680.224 kb on - strand, within Xcc-8004.1748.1 at 1680.224 kb on - strand, within Xcc-8004.1748.1 at 1680.224 kb on - strand, within Xcc-8004.1748.1 at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.274 kb on + strand at 1680.275 kb on - strand at 1680.275 kb on - strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.301 kb on + strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.302 kb on - strand at 1680.317 kb on + strand at 1680.317 kb on + strand at 1680.317 kb on + strand at 1680.318 kb on - strand at 1680.318 kb on - strand at 1680.344 kb on - strand at 1680.344 kb on - strand at 1680.459 kb on + strand at 1680.459 kb on + strand at 1680.459 kb on + strand at 1680.459 kb on + strand at 1680.460 kb on - strand at 1680.460 kb on - strand at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.582 kb on + strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.583 kb on - strand, within Xcc-8004.1749.1 at 1680.587 kb on - strand, within Xcc-8004.1749.1 at 1680.587 kb on - strand, within Xcc-8004.1749.1 at 1680.587 kb on - strand, within Xcc-8004.1749.1 at 1680.645 kb on - strand, within Xcc-8004.1749.1 at 1680.768 kb on - strand at 1680.970 kb on + strand at 1681.161 kb on + strand, within Xcc-8004.1750.1 at 1681.161 kb on + strand, within Xcc-8004.1750.1 at 1681.161 kb on + strand, within Xcc-8004.1750.1 at 1681.162 kb on - strand, within Xcc-8004.1750.1 at 1681.162 kb on - strand, within Xcc-8004.1750.1 at 1681.191 kb on + strand, within Xcc-8004.1750.1 at 1681.191 kb on + strand, within Xcc-8004.1750.1 at 1681.192 kb on - strand, within Xcc-8004.1750.1 at 1681.192 kb on - strand, within Xcc-8004.1750.1 at 1681.192 kb on - strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.209 kb on + strand, within Xcc-8004.1750.1 at 1681.210 kb on - strand, within Xcc-8004.1750.1 at 1681.210 kb on - strand, within Xcc-8004.1750.1 at 1681.210 kb on - strand, within Xcc-8004.1750.1 at 1681.220 kb on - strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.251 kb on + strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.252 kb on - strand, within Xcc-8004.1750.1 at 1681.359 kb on + strand, within Xcc-8004.1750.1 at 1681.359 kb on + strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.360 kb on - strand, within Xcc-8004.1750.1 at 1681.522 kb on + strand, within Xcc-8004.1750.1 at 1681.522 kb on + strand, within Xcc-8004.1750.1 at 1681.523 kb on - strand, within Xcc-8004.1750.1 at 1681.581 kb on + strand, within Xcc-8004.1750.1 at 1681.582 kb on - strand, within Xcc-8004.1750.1 at 1681.582 kb on - strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.738 kb on + strand, within Xcc-8004.1750.1 at 1681.739 kb on - strand, within Xcc-8004.1750.1 at 1681.739 kb on - strand, within Xcc-8004.1750.1 at 1681.739 kb on - strand, within Xcc-8004.1750.1 at 1681.894 kb on + strand, within Xcc-8004.1750.1 at 1681.895 kb on - strand, within Xcc-8004.1750.1 at 1681.895 kb on - strand, within Xcc-8004.1750.1 at 1681.963 kb on - strand, within Xcc-8004.1750.1 at 1681.963 kb on - strand, within Xcc-8004.1750.1 at 1681.963 kb on - strand, within Xcc-8004.1750.1 at 1682.109 kb on + strand, within Xcc-8004.1750.1 at 1682.109 kb on + strand, within Xcc-8004.1750.1 at 1682.109 kb on + strand, within Xcc-8004.1750.1 at 1682.223 kb on + strand at 1682.223 kb on + strand at 1682.224 kb on - strand at 1682.224 kb on - strand at 1682.238 kb on + strand at 1682.238 kb on + strand at 1682.239 kb on - strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.247 kb on + strand at 1682.261 kb on + strand at 1682.261 kb on + strand at 1682.262 kb on - strand at 1682.368 kb on + strand at 1682.368 kb on + strand at 1682.454 kb on + strand at 1682.454 kb on + strand at 1683.045 kb on + strand, within Xcc-8004.1751.1 at 1683.072 kb on + strand, within Xcc-8004.1751.1 at 1683.141 kb on + strand, within Xcc-8004.1751.1 at 1683.141 kb on + strand, within Xcc-8004.1751.1 at 1683.142 kb on - strand, within Xcc-8004.1751.1 at 1683.142 kb on - strand, within Xcc-8004.1751.1 at 1683.142 kb on - strand, within Xcc-8004.1751.1 at 1683.273 kb on + strand, within Xcc-8004.1751.1 at 1683.273 kb on + strand, within Xcc-8004.1751.1 at 1683.273 kb on + strand, within Xcc-8004.1751.1 at 1683.274 kb on - strand, within Xcc-8004.1751.1 at 1683.274 kb on - strand, within Xcc-8004.1751.1 at 1683.274 kb on - strand, within Xcc-8004.1751.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,679,912 + -1.0 1,679,913 - +0.3 1,680,039 - +0.5 1,680,039 - +0.9 1,680,039 - -0.1 1,680,057 + +0.9 1,680,223 + Xcc-8004.1748.1 0.42 +0.5 1,680,223 + Xcc-8004.1748.1 0.42 +0.4 1,680,223 + Xcc-8004.1748.1 0.42 +1.4 1,680,223 + Xcc-8004.1748.1 0.42 -0.4 1,680,224 - Xcc-8004.1748.1 0.43 +0.6 1,680,224 - Xcc-8004.1748.1 0.43 +0.2 1,680,224 - Xcc-8004.1748.1 0.43 +1.3 1,680,274 + -0.5 1,680,274 + +0.1 1,680,274 + +0.2 1,680,274 + -0.9 1,680,274 + +0.1 1,680,274 + -0.8 1,680,275 - -1.7 1,680,275 - +0.3 1,680,301 + -0.7 1,680,301 + +0.7 1,680,301 + -1.9 1,680,301 + -0.9 1,680,301 + -0.1 1,680,301 + -2.6 1,680,301 + +1.1 1,680,301 + -0.7 1,680,301 + -0.1 1,680,301 + -0.2 1,680,301 + +1.4 1,680,301 + +0.8 1,680,301 + +0.8 1,680,301 + -0.7 1,680,301 + -0.3 1,680,301 + +0.3 1,680,301 + -1.9 1,680,301 + -2.2 1,680,302 - +0.4 1,680,302 - -2.2 1,680,302 - +1.2 1,680,302 - +0.7 1,680,302 - -0.7 1,680,302 - +0.8 1,680,302 - +1.1 1,680,302 - -1.1 1,680,302 - +0.5 1,680,302 - -0.3 1,680,302 - -0.1 1,680,302 - +0.5 1,680,302 - -0.7 1,680,302 - +0.6 1,680,302 - -0.9 1,680,317 + -0.5 1,680,317 + -1.2 1,680,317 + +1.3 1,680,318 - +2.1 1,680,318 - -1.0 1,680,344 - +0.5 1,680,344 - -2.5 1,680,459 + +0.2 1,680,459 + -0.7 1,680,459 + -0.5 1,680,459 + +0.5 1,680,460 - -0.2 1,680,460 - -0.4 1,680,582 + Xcc-8004.1749.1 0.10 +0.4 1,680,582 + Xcc-8004.1749.1 0.10 -0.3 1,680,582 + Xcc-8004.1749.1 0.10 -0.7 1,680,582 + Xcc-8004.1749.1 0.10 -0.4 1,680,582 + Xcc-8004.1749.1 0.10 +0.1 1,680,582 + Xcc-8004.1749.1 0.10 -0.0 1,680,582 + Xcc-8004.1749.1 0.10 +3.1 1,680,582 + Xcc-8004.1749.1 0.10 +0.7 1,680,582 + Xcc-8004.1749.1 0.10 -1.1 1,680,582 + Xcc-8004.1749.1 0.10 -0.4 1,680,582 + Xcc-8004.1749.1 0.10 +0.5 1,680,583 - Xcc-8004.1749.1 0.11 +0.3 1,680,583 - Xcc-8004.1749.1 0.11 -0.3 1,680,583 - Xcc-8004.1749.1 0.11 -0.4 1,680,583 - Xcc-8004.1749.1 0.11 +1.5 1,680,583 - Xcc-8004.1749.1 0.11 -0.9 1,680,583 - Xcc-8004.1749.1 0.11 -0.9 1,680,587 - Xcc-8004.1749.1 0.12 -0.4 1,680,587 - Xcc-8004.1749.1 0.12 +0.0 1,680,587 - Xcc-8004.1749.1 0.12 +0.2 1,680,645 - Xcc-8004.1749.1 0.39 +0.4 1,680,768 - -2.2 1,680,970 + +1.1 1,681,161 + Xcc-8004.1750.1 0.19 +0.1 1,681,161 + Xcc-8004.1750.1 0.19 -0.5 1,681,161 + Xcc-8004.1750.1 0.19 -1.1 1,681,162 - Xcc-8004.1750.1 0.19 -0.9 1,681,162 - Xcc-8004.1750.1 0.19 +0.6 1,681,191 + Xcc-8004.1750.1 0.21 -0.4 1,681,191 + Xcc-8004.1750.1 0.21 -1.4 1,681,192 - Xcc-8004.1750.1 0.21 +0.4 1,681,192 - Xcc-8004.1750.1 0.21 +1.0 1,681,192 - Xcc-8004.1750.1 0.21 -0.2 1,681,209 + Xcc-8004.1750.1 0.22 -0.5 1,681,209 + Xcc-8004.1750.1 0.22 -1.0 1,681,209 + Xcc-8004.1750.1 0.22 +0.4 1,681,209 + Xcc-8004.1750.1 0.22 +1.1 1,681,209 + Xcc-8004.1750.1 0.22 +0.4 1,681,210 - Xcc-8004.1750.1 0.22 +0.3 1,681,210 - Xcc-8004.1750.1 0.22 -0.7 1,681,210 - Xcc-8004.1750.1 0.22 -0.5 1,681,220 - Xcc-8004.1750.1 0.23 +0.8 1,681,251 + Xcc-8004.1750.1 0.25 -1.7 1,681,251 + Xcc-8004.1750.1 0.25 -1.2 1,681,251 + Xcc-8004.1750.1 0.25 -0.2 1,681,251 + Xcc-8004.1750.1 0.25 +0.2 1,681,252 - Xcc-8004.1750.1 0.25 +0.4 1,681,252 - Xcc-8004.1750.1 0.25 -0.7 1,681,252 - Xcc-8004.1750.1 0.25 -0.3 1,681,252 - Xcc-8004.1750.1 0.25 +0.5 1,681,252 - Xcc-8004.1750.1 0.25 -0.1 1,681,252 - Xcc-8004.1750.1 0.25 +0.6 1,681,252 - Xcc-8004.1750.1 0.25 -1.3 1,681,359 + Xcc-8004.1750.1 0.33 +0.5 1,681,359 + Xcc-8004.1750.1 0.33 -0.1 1,681,360 - Xcc-8004.1750.1 0.33 +0.3 1,681,360 - Xcc-8004.1750.1 0.33 +0.2 1,681,360 - Xcc-8004.1750.1 0.33 -1.3 1,681,360 - Xcc-8004.1750.1 0.33 -0.3 1,681,360 - Xcc-8004.1750.1 0.33 +0.2 1,681,360 - Xcc-8004.1750.1 0.33 -0.1 1,681,522 + Xcc-8004.1750.1 0.45 +0.7 1,681,522 + Xcc-8004.1750.1 0.45 +0.6 1,681,523 - Xcc-8004.1750.1 0.45 -0.3 1,681,581 + Xcc-8004.1750.1 0.49 -0.3 1,681,582 - Xcc-8004.1750.1 0.49 -0.2 1,681,582 - Xcc-8004.1750.1 0.49 +0.8 1,681,738 + Xcc-8004.1750.1 0.60 +0.9 1,681,738 + Xcc-8004.1750.1 0.60 +0.3 1,681,738 + Xcc-8004.1750.1 0.60 -1.1 1,681,738 + Xcc-8004.1750.1 0.60 +0.1 1,681,738 + Xcc-8004.1750.1 0.60 -0.9 1,681,739 - Xcc-8004.1750.1 0.60 -2.0 1,681,739 - Xcc-8004.1750.1 0.60 +0.4 1,681,739 - Xcc-8004.1750.1 0.60 +0.7 1,681,894 + Xcc-8004.1750.1 0.71 +0.5 1,681,895 - Xcc-8004.1750.1 0.71 +0.1 1,681,895 - Xcc-8004.1750.1 0.71 -0.7 1,681,963 - Xcc-8004.1750.1 0.76 -1.2 1,681,963 - Xcc-8004.1750.1 0.76 -0.1 1,681,963 - Xcc-8004.1750.1 0.76 -0.4 1,682,109 + Xcc-8004.1750.1 0.87 -0.4 1,682,109 + Xcc-8004.1750.1 0.87 +0.5 1,682,109 + Xcc-8004.1750.1 0.87 -0.4 1,682,223 + -0.6 1,682,223 + -0.1 1,682,224 - +1.2 1,682,224 - -1.2 1,682,238 + -1.7 1,682,238 + +1.0 1,682,239 - -0.5 1,682,247 + +1.3 1,682,247 + +0.5 1,682,247 + -1.5 1,682,247 + +0.3 1,682,247 + -1.8 1,682,261 + +1.1 1,682,261 + +1.3 1,682,262 - -0.9 1,682,368 + -0.7 1,682,368 + +0.9 1,682,454 + +0.8 1,682,454 + +0.2 1,683,045 + Xcc-8004.1751.1 0.49 +1.8 1,683,072 + Xcc-8004.1751.1 0.52 +0.2 1,683,141 + Xcc-8004.1751.1 0.57 +0.0 1,683,141 + Xcc-8004.1751.1 0.57 +2.1 1,683,142 - Xcc-8004.1751.1 0.58 +0.9 1,683,142 - Xcc-8004.1751.1 0.58 +1.3 1,683,142 - Xcc-8004.1751.1 0.58 +1.6 1,683,273 + Xcc-8004.1751.1 0.69 -0.3 1,683,273 + Xcc-8004.1751.1 0.69 +0.7 1,683,273 + Xcc-8004.1751.1 0.69 -0.8 1,683,274 - Xcc-8004.1751.1 0.69 +1.5 1,683,274 - Xcc-8004.1751.1 0.69 -0.2 1,683,274 - Xcc-8004.1751.1 0.69 -0.2
Or see this region's nucleotide sequence