Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1637.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
1,576,340	+				+1.0
1,576,341	-				+0.3
1,576,396	+				+1.2
1,576,397	-				-0.4
1,576,593	+				-0.4
1,576,594	-				-1.9
1,576,594	-				-1.3
1,576,594	-				+0.2
1,576,594	-				-1.6
1,576,638	-		Xcc-8004.1636.1	0.11	-1.3
1,576,638	-		Xcc-8004.1636.1	0.11	-0.7
1,576,660	-		Xcc-8004.1636.1	0.16	-0.7
1,576,660	-		Xcc-8004.1636.1	0.16	-0.9
1,576,805	-		Xcc-8004.1636.1	0.51	+0.3
1,576,805	-		Xcc-8004.1636.1	0.51	+0.6
1,576,805	-		Xcc-8004.1636.1	0.51	+0.5
1,576,900	+		Xcc-8004.1636.1	0.73	+0.3
1,576,901	-		Xcc-8004.1636.1	0.74	+1.3
1,576,901	-		Xcc-8004.1636.1	0.74	+0.2
1,577,082	+				+0.6
1,577,082	+				-1.9
1,577,115	+		Xcc-8004.1637.1	0.15	+0.9
1,577,115	+		Xcc-8004.1637.1	0.15	-0.5
1,577,116	-		Xcc-8004.1637.1	0.15	+1.8
1,577,116	-		Xcc-8004.1637.1	0.15	+0.0
1,577,116	-		Xcc-8004.1637.1	0.15	+0.4
1,577,235	+		Xcc-8004.1637.1	0.38	-0.0
1,577,235	+		Xcc-8004.1637.1	0.38	-0.4
1,577,235	+		Xcc-8004.1637.1	0.38	+0.9
1,577,236	-		Xcc-8004.1637.1	0.38	-1.9
1,577,236	-		Xcc-8004.1637.1	0.38	-0.2
1,577,236	-		Xcc-8004.1637.1	0.38	-0.7
1,577,236	-		Xcc-8004.1637.1	0.38	-1.3
1,577,280	+		Xcc-8004.1637.1	0.47	+1.0
1,577,281	-		Xcc-8004.1637.1	0.47	-0.3
1,577,299	-		Xcc-8004.1637.1	0.51	-0.1
1,577,328	+		Xcc-8004.1637.1	0.56	+1.2
1,577,329	-		Xcc-8004.1637.1	0.57	+0.5
1,577,443	+		Xcc-8004.1637.1	0.79	+0.8
1,577,444	-		Xcc-8004.1637.1	0.79	-1.1
1,577,444	-		Xcc-8004.1637.1	0.79	+0.7
1,577,596	+				-0.1
1,577,597	-				+0.1
1,577,597	-				+0.4
1,577,648	+				-0.2
1,577,649	-				-0.4
1,577,654	+				-0.6
1,577,654	+				-0.5
1,577,659	+				+1.2
1,577,691	-				-0.6
1,578,080	+				-0.6
1,578,080	+				+0.6
1,578,081	-				-0.0
1,578,081	-				+0.2
1,578,081	-				-0.6
1,578,159	-		Xcc-8004.1639.1	0.19	-0.1
1,578,159	-		Xcc-8004.1639.1	0.19	-1.5
1,578,172	+		Xcc-8004.1639.1	0.24	+0.3
1,578,172	+		Xcc-8004.1639.1	0.24	+1.0
1,578,173	-		Xcc-8004.1639.1	0.25	-0.4
1,578,173	-		Xcc-8004.1639.1	0.25	-0.5
1,578,173	-		Xcc-8004.1639.1	0.25	-0.8
1,578,181	+		Xcc-8004.1639.1	0.28	+0.6
1,578,182	-		Xcc-8004.1639.1	0.28	+0.2
1,578,214	+		Xcc-8004.1639.1	0.40	+0.8
1,578,215	-		Xcc-8004.1639.1	0.41	+0.1
1,578,215	-		Xcc-8004.1639.1	0.41	-0.3
1,578,403	+				+0.7
1,578,403	+				+0.6
1,578,403	+				-0.6
1,578,403	+				-0.3