Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1410.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1409.1 and Xcc-8004.1410.1 are separated by 888 nucleotidesXcc-8004.1410.1 and Xcc-8004.1411.1 are separated by 102 nucleotides Xcc-8004.1409.1: Xcc-8004.1409.1 - Cation:proton antiporter, at 1,340,146 to 1,341,924 Xcc-8004.1409.1 Xcc-8004.1410.1: Xcc-8004.1410.1 - putative cytochrome P450 hydroxylase, at 1,342,813 to 1,344,108 Xcc-8004.1410.1 Xcc-8004.1411.1: Xcc-8004.1411.1 - Outer membrane receptor proteins, mostly Fe transport, at 1,344,211 to 1,346,610 Xcc-8004.1411.1 Position (kb) 1342 1343 1344 1345Strain fitness (log2 ratio) -2 -1 0 1 2at 1341.995 kb on + strandat 1341.995 kb on + strandat 1341.995 kb on + strandat 1341.995 kb on + strandat 1341.996 kb on - strandat 1341.996 kb on - strandat 1341.996 kb on - strandat 1341.996 kb on - strandat 1341.998 kb on + strandat 1341.998 kb on + strandat 1341.998 kb on + strandat 1341.999 kb on - strandat 1341.999 kb on - strandat 1341.999 kb on - strandat 1342.014 kb on - strandat 1342.242 kb on + strandat 1342.242 kb on + strandat 1342.243 kb on - strandat 1342.337 kb on + strandat 1342.338 kb on - strandat 1342.338 kb on - strandat 1342.381 kb on + strandat 1342.382 kb on - strandat 1342.382 kb on - strandat 1342.382 kb on - strandat 1342.487 kb on - strandat 1342.708 kb on - strandat 1342.725 kb on + strandat 1342.914 kb on + strandat 1342.914 kb on + strandat 1342.915 kb on - strandat 1342.915 kb on - strandat 1342.960 kb on + strand, within Xcc-8004.1410.1at 1342.969 kb on + strand, within Xcc-8004.1410.1at 1342.969 kb on + strand, within Xcc-8004.1410.1at 1342.969 kb on + strand, within Xcc-8004.1410.1at 1342.969 kb on + strand, within Xcc-8004.1410.1at 1342.969 kb on + strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1342.970 kb on - strand, within Xcc-8004.1410.1at 1343.036 kb on - strand, within Xcc-8004.1410.1at 1343.036 kb on - strand, within Xcc-8004.1410.1at 1343.084 kb on - strand, within Xcc-8004.1410.1at 1343.084 kb on - strand, within Xcc-8004.1410.1at 1343.084 kb on - strand, within Xcc-8004.1410.1at 1343.240 kb on + strand, within Xcc-8004.1410.1at 1343.298 kb on + strand, within Xcc-8004.1410.1at 1343.298 kb on + strand, within Xcc-8004.1410.1at 1343.298 kb on + strand, within Xcc-8004.1410.1at 1343.298 kb on + strand, within Xcc-8004.1410.1at 1343.298 kb on + strand, within Xcc-8004.1410.1at 1343.299 kb on - strand, within Xcc-8004.1410.1at 1343.470 kb on + strand, within Xcc-8004.1410.1at 1343.471 kb on - strand, within Xcc-8004.1410.1at 1343.471 kb on - strand, within Xcc-8004.1410.1at 1343.471 kb on - strand, within Xcc-8004.1410.1at 1343.489 kb on - strand, within Xcc-8004.1410.1at 1343.489 kb on - strand, within Xcc-8004.1410.1at 1343.752 kb on + strand, within Xcc-8004.1410.1at 1343.753 kb on - strand, within Xcc-8004.1410.1at 1343.840 kb on - strand, within Xcc-8004.1410.1at 1343.840 kb on - strand, within Xcc-8004.1410.1at 1343.840 kb on - strand, within Xcc-8004.1410.1at 1343.904 kb on - strand, within Xcc-8004.1410.1at 1343.904 kb on - strand, within Xcc-8004.1410.1at 1344.106 kb on + strandat 1344.107 kb on - strandat 1344.107 kb on - strandat 1344.119 kb on - strandat 1344.242 kb on + strandat 1344.278 kb on + strandat 1344.425 kb on + strandat 1344.425 kb on + strandat 1344.425 kb on + strandat 1344.426 kb on - strandat 1344.426 kb on - strandat 1344.426 kb on - strandat 1344.426 kb on - strandat 1344.539 kb on + strand, within Xcc-8004.1411.1at 1344.539 kb on + strand, within Xcc-8004.1411.1at 1344.539 kb on + strand, within Xcc-8004.1411.1at 1344.539 kb on + strand, within Xcc-8004.1411.1at 1344.539 kb on + strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.540 kb on - strand, within Xcc-8004.1411.1at 1344.629 kb on + strand, within Xcc-8004.1411.1at 1344.629 kb on + strand, within Xcc-8004.1411.1at 1344.629 kb on + strand, within Xcc-8004.1411.1at 1344.629 kb on + strand, within Xcc-8004.1411.1at 1344.630 kb on - strand, within Xcc-8004.1411.1at 1344.630 kb on - strand, within Xcc-8004.1411.1at 1344.683 kb on + strand, within Xcc-8004.1411.1at 1344.683 kb on + strand, within Xcc-8004.1411.1at 1344.683 kb on + strand, within Xcc-8004.1411.1at 1344.684 kb on - strand, within Xcc-8004.1411.1at 1344.684 kb on - strand, within Xcc-8004.1411.1at 1344.684 kb on - strand, within Xcc-8004.1411.1at 1344.684 kb on - strand, within Xcc-8004.1411.1at 1344.821 kb on + strand, within Xcc-8004.1411.1at 1344.821 kb on + strand, within Xcc-8004.1411.1at 1344.822 kb on - strand, within Xcc-8004.1411.1at 1344.879 kb on - strand, within Xcc-8004.1411.1at 1344.879 kb on - strand, within Xcc-8004.1411.1at 1344.879 kb on - strand, within Xcc-8004.1411.1at 1344.947 kb on + strand, within Xcc-8004.1411.1at 1345.002 kb on - strand, within Xcc-8004.1411.1at 1345.002 kb on - strand, within Xcc-8004.1411.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,341,995 + -0.2
1,341,995 + -0.2
1,341,995 + -0.6
1,341,995 + +0.4
1,341,996 - -1.1
1,341,996 - +0.7
1,341,996 - -0.1
1,341,996 - -1.5
1,341,998 + +0.4
1,341,998 + -0.0
1,341,998 + +0.9
1,341,999 - -0.6
1,341,999 - -0.6
1,341,999 - +0.8
1,342,014 - -1.2
1,342,242 + -1.0
1,342,242 + -0.1
1,342,243 - -2.3
1,342,337 + -0.8
1,342,338 - +0.8
1,342,338 - +0.8
1,342,381 + -0.1
1,342,382 - -1.2
1,342,382 - +1.8
1,342,382 - -0.5
1,342,487 - +0.6
1,342,708 - -0.2
1,342,725 + -0.1
1,342,914 + -0.8
1,342,914 + +0.9
1,342,915 - +1.1
1,342,915 - +0.6
1,342,960 + Xcc-8004.1410.1 0.11 +0.9
1,342,969 + Xcc-8004.1410.1 0.12 +0.2
1,342,969 + Xcc-8004.1410.1 0.12 -0.9
1,342,969 + Xcc-8004.1410.1 0.12 -0.5
1,342,969 + Xcc-8004.1410.1 0.12 -0.1
1,342,969 + Xcc-8004.1410.1 0.12 -1.8
1,342,970 - Xcc-8004.1410.1 0.12 +1.4
1,342,970 - Xcc-8004.1410.1 0.12 +0.5
1,342,970 - Xcc-8004.1410.1 0.12 -1.1
1,342,970 - Xcc-8004.1410.1 0.12 +0.9
1,342,970 - Xcc-8004.1410.1 0.12 +0.7
1,342,970 - Xcc-8004.1410.1 0.12 -0.8
1,342,970 - Xcc-8004.1410.1 0.12 -1.3
1,342,970 - Xcc-8004.1410.1 0.12 +0.5
1,342,970 - Xcc-8004.1410.1 0.12 -0.1
1,342,970 - Xcc-8004.1410.1 0.12 +0.2
1,342,970 - Xcc-8004.1410.1 0.12 -0.1
1,343,036 - Xcc-8004.1410.1 0.17 +0.7
1,343,036 - Xcc-8004.1410.1 0.17 +1.0
1,343,084 - Xcc-8004.1410.1 0.21 -0.7
1,343,084 - Xcc-8004.1410.1 0.21 -0.6
1,343,084 - Xcc-8004.1410.1 0.21 +0.3
1,343,240 + Xcc-8004.1410.1 0.33 -0.4
1,343,298 + Xcc-8004.1410.1 0.37 +0.4
1,343,298 + Xcc-8004.1410.1 0.37 -1.9
1,343,298 + Xcc-8004.1410.1 0.37 +0.2
1,343,298 + Xcc-8004.1410.1 0.37 +0.6
1,343,298 + Xcc-8004.1410.1 0.37 +0.9
1,343,299 - Xcc-8004.1410.1 0.38 -1.6
1,343,470 + Xcc-8004.1410.1 0.51 +1.2
1,343,471 - Xcc-8004.1410.1 0.51 -0.1
1,343,471 - Xcc-8004.1410.1 0.51 +0.4
1,343,471 - Xcc-8004.1410.1 0.51 +0.2
1,343,489 - Xcc-8004.1410.1 0.52 +1.0
1,343,489 - Xcc-8004.1410.1 0.52 +0.7
1,343,752 + Xcc-8004.1410.1 0.72 -0.4
1,343,753 - Xcc-8004.1410.1 0.73 -0.7
1,343,840 - Xcc-8004.1410.1 0.79 -0.7
1,343,840 - Xcc-8004.1410.1 0.79 -1.0
1,343,840 - Xcc-8004.1410.1 0.79 +1.5
1,343,904 - Xcc-8004.1410.1 0.84 +0.5
1,343,904 - Xcc-8004.1410.1 0.84 -0.3
1,344,106 + +0.0
1,344,107 - -0.3
1,344,107 - -0.0
1,344,119 - -0.9
1,344,242 + +0.1
1,344,278 + -0.4
1,344,425 + +0.7
1,344,425 + -1.9
1,344,425 + +0.5
1,344,426 - +0.4
1,344,426 - -0.4
1,344,426 - -0.3
1,344,426 - -0.8
1,344,539 + Xcc-8004.1411.1 0.14 +0.2
1,344,539 + Xcc-8004.1411.1 0.14 -0.3
1,344,539 + Xcc-8004.1411.1 0.14 +0.1
1,344,539 + Xcc-8004.1411.1 0.14 -0.3
1,344,539 + Xcc-8004.1411.1 0.14 -0.2
1,344,540 - Xcc-8004.1411.1 0.14 +0.4
1,344,540 - Xcc-8004.1411.1 0.14 +0.4
1,344,540 - Xcc-8004.1411.1 0.14 -1.4
1,344,540 - Xcc-8004.1411.1 0.14 -1.1
1,344,540 - Xcc-8004.1411.1 0.14 +0.7
1,344,540 - Xcc-8004.1411.1 0.14 +0.1
1,344,540 - Xcc-8004.1411.1 0.14 +0.4
1,344,629 + Xcc-8004.1411.1 0.17 -0.1
1,344,629 + Xcc-8004.1411.1 0.17 -0.1
1,344,629 + Xcc-8004.1411.1 0.17 +0.4
1,344,629 + Xcc-8004.1411.1 0.17 -0.3
1,344,630 - Xcc-8004.1411.1 0.17 -0.2
1,344,630 - Xcc-8004.1411.1 0.17 -0.7
1,344,683 + Xcc-8004.1411.1 0.20 +0.6
1,344,683 + Xcc-8004.1411.1 0.20 +0.5
1,344,683 + Xcc-8004.1411.1 0.20 -0.3
1,344,684 - Xcc-8004.1411.1 0.20 -0.3
1,344,684 - Xcc-8004.1411.1 0.20 -0.9
1,344,684 - Xcc-8004.1411.1 0.20 -0.5
1,344,684 - Xcc-8004.1411.1 0.20 +0.7
1,344,821 + Xcc-8004.1411.1 0.25 +0.5
1,344,821 + Xcc-8004.1411.1 0.25 +0.0
1,344,822 - Xcc-8004.1411.1 0.25 +2.5
1,344,879 - Xcc-8004.1411.1 0.28 +0.4
1,344,879 - Xcc-8004.1411.1 0.28 +0.3
1,344,879 - Xcc-8004.1411.1 0.28 +0.8
1,344,947 + Xcc-8004.1411.1 0.31 -0.1
1,345,002 - Xcc-8004.1411.1 0.33 -1.1
1,345,002 - Xcc-8004.1411.1 0.33 -0.5

Or see this region's nucleotide sequence