Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.92.1 and Xcc-8004.93.1 are separated by 397 nucleotides Xcc-8004.93.1 and Xcc-8004.94.1 are separated by 47 nucleotides Xcc-8004.94.1 and Xcc-8004.95.1 are separated by 480 nucleotides
Xcc-8004.92.1: Xcc-8004.92.1 - Dihydrofolate reductase (EC 1.5.1.3), at 84,625 to 85,386
Xcc-8004.92.1
Xcc-8004.93.1: Xcc-8004.93.1 - FIG01211857: hypothetical protein, at 85,784 to 86,059
Xcc-8004.93.1
Xcc-8004.94.1: Xcc-8004.94.1 - Transcriptional regulator, LuxR family, at 86,107 to 86,334
Xcc-8004.94.1
Xcc-8004.95.1: Xcc-8004.95.1 - FIG01212373: hypothetical protein, at 86,815 to 87,768
Xcc-8004.95.1
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 85.068 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.246 kb on + strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.247 kb on - strand, within Xcc-8004.92.1 at 85.373 kb on - strand at 85.384 kb on + strand at 85.384 kb on + strand at 85.385 kb on - strand at 85.385 kb on - strand at 85.385 kb on - strand at 85.454 kb on + strand at 85.454 kb on + strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.455 kb on - strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.531 kb on + strand at 85.532 kb on - strand at 85.576 kb on + strand at 85.631 kb on - strand at 85.696 kb on + strand at 85.785 kb on + strand at 85.786 kb on - strand at 85.786 kb on - strand at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.966 kb on + strand, within Xcc-8004.93.1 at 85.986 kb on + strand, within Xcc-8004.93.1 at 86.070 kb on + strand at 86.070 kb on + strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.071 kb on - strand at 86.097 kb on + strand at 86.187 kb on + strand, within Xcc-8004.94.1 at 86.187 kb on + strand, within Xcc-8004.94.1 at 86.453 kb on - strand at 86.453 kb on - strand at 86.453 kb on - strand at 86.499 kb on - strand at 86.590 kb on + strand at 86.590 kb on + strand at 86.590 kb on + strand at 86.590 kb on + strand at 86.591 kb on - strand at 86.614 kb on + strand at 86.614 kb on + strand at 86.615 kb on - strand at 86.684 kb on + strand at 86.685 kb on - strand at 86.685 kb on - strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.744 kb on + strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.745 kb on - strand at 86.751 kb on + strand at 86.752 kb on - strand at 86.752 kb on - strand at 86.929 kb on + strand, within Xcc-8004.95.1 at 86.930 kb on - strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.947 kb on + strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1 at 86.948 kb on - strand, within Xcc-8004.95.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 85,068 + Xcc-8004.92.1 0.58 -0.6 85,246 + Xcc-8004.92.1 0.81 +0.8 85,246 + Xcc-8004.92.1 0.81 +0.4 85,246 + Xcc-8004.92.1 0.81 -0.1 85,246 + Xcc-8004.92.1 0.81 -0.1 85,246 + Xcc-8004.92.1 0.81 -1.7 85,246 + Xcc-8004.92.1 0.81 -0.2 85,246 + Xcc-8004.92.1 0.81 -0.5 85,246 + Xcc-8004.92.1 0.81 -1.8 85,246 + Xcc-8004.92.1 0.81 -1.4 85,246 + Xcc-8004.92.1 0.81 +0.4 85,247 - Xcc-8004.92.1 0.82 +1.0 85,247 - Xcc-8004.92.1 0.82 -0.9 85,247 - Xcc-8004.92.1 0.82 +0.5 85,247 - Xcc-8004.92.1 0.82 -0.3 85,373 - -1.2 85,384 + +1.7 85,384 + -1.1 85,385 - -1.7 85,385 - -0.6 85,385 - +0.1 85,454 + +0.1 85,454 + -1.2 85,455 - -0.4 85,455 - -1.1 85,455 - -1.2 85,455 - -1.7 85,531 + -0.6 85,531 + +0.4 85,531 + +1.3 85,531 + +0.4 85,531 + -0.9 85,532 - -0.0 85,576 + +0.4 85,631 - +0.7 85,696 + -0.6 85,785 + +0.1 85,786 - +0.1 85,786 - -1.9 85,966 + Xcc-8004.93.1 0.66 -1.9 85,966 + Xcc-8004.93.1 0.66 +0.0 85,966 + Xcc-8004.93.1 0.66 -0.3 85,966 + Xcc-8004.93.1 0.66 -1.1 85,986 + Xcc-8004.93.1 0.73 -0.8 86,070 + +0.8 86,070 + +0.0 86,071 - -0.6 86,071 - +0.5 86,071 - -0.9 86,071 - -0.6 86,071 - -0.2 86,097 + -1.0 86,187 + Xcc-8004.94.1 0.35 +1.9 86,187 + Xcc-8004.94.1 0.35 -0.6 86,453 - -1.7 86,453 - -0.4 86,453 - +0.9 86,499 - +0.6 86,590 + -0.1 86,590 + +0.4 86,590 + -0.9 86,590 + +0.8 86,591 - -0.4 86,614 + -1.2 86,614 + +1.8 86,615 - -1.9 86,684 + +2.7 86,685 - +0.6 86,685 - +0.4 86,744 + -0.4 86,744 + +0.4 86,744 + -1.4 86,744 + -0.7 86,744 + -1.3 86,744 + +0.9 86,744 + +0.8 86,745 - +0.2 86,745 - +0.9 86,745 - -0.3 86,745 - -0.2 86,745 - -0.9 86,751 + -0.5 86,752 - +0.1 86,752 - +0.1 86,929 + Xcc-8004.95.1 0.12 -0.3 86,930 - Xcc-8004.95.1 0.12 +0.8 86,947 + Xcc-8004.95.1 0.14 -0.4 86,947 + Xcc-8004.95.1 0.14 -0.4 86,947 + Xcc-8004.95.1 0.14 +0.5 86,947 + Xcc-8004.95.1 0.14 -0.2 86,947 + Xcc-8004.95.1 0.14 +3.3 86,948 - Xcc-8004.95.1 0.14 +0.6 86,948 - Xcc-8004.95.1 0.14 +1.2 86,948 - Xcc-8004.95.1 0.14 -0.3 86,948 - Xcc-8004.95.1 0.14 +0.1 86,948 - Xcc-8004.95.1 0.14 +1.1 86,948 - Xcc-8004.95.1 0.14 -0.5 86,948 - Xcc-8004.95.1 0.14 +0.7 86,948 - Xcc-8004.95.1 0.14 +1.4 86,948 - Xcc-8004.95.1 0.14 -0.2
Or see this region's nucleotide sequence