Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02670 and H281DRAFT_02671 are separated by 134 nucleotides H281DRAFT_02671 and H281DRAFT_02672 are separated by 170 nucleotides H281DRAFT_02672 and H281DRAFT_02673 are separated by 112 nucleotides H281DRAFT_02673 and H281DRAFT_02674 are separated by 30 nucleotides
H281DRAFT_02670: H281DRAFT_02670 - transcriptional regulator, GntR family, at 251,007 to 251,693
_02670
H281DRAFT_02671: H281DRAFT_02671 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 251,828 to 252,232
_02671
H281DRAFT_02672: H281DRAFT_02672 - 3-oxoadipate enol-lactonase, at 252,403 to 253,197
_02672
H281DRAFT_02673: H281DRAFT_02673 - Carbon monoxide dehydrogenase subunit G, at 253,310 to 254,056
_02673
H281DRAFT_02674: H281DRAFT_02674 - carbon-monoxide dehydrogenase medium subunit, at 254,087 to 254,968
_02674
Position (kb) 252
253
254 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 251.637 kb on + strand at 251.637 kb on + strand at 251.638 kb on - strand at 251.681 kb on + strand at 251.681 kb on + strand at 251.681 kb on + strand at 251.687 kb on + strand at 251.687 kb on + strand at 251.718 kb on - strand at 251.823 kb on + strand at 251.887 kb on - strand, within H281DRAFT_02671 at 251.902 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.965 kb on - strand, within H281DRAFT_02671 at 251.965 kb on - strand, within H281DRAFT_02671 at 252.074 kb on - strand, within H281DRAFT_02671 at 252.143 kb on + strand, within H281DRAFT_02671 at 252.143 kb on + strand at 252.144 kb on - strand, within H281DRAFT_02671 at 252.395 kb on + strand at 252.449 kb on - strand at 252.547 kb on + strand, within H281DRAFT_02672 at 252.547 kb on + strand, within H281DRAFT_02672 at 252.547 kb on + strand, within H281DRAFT_02672 at 252.548 kb on - strand, within H281DRAFT_02672 at 252.548 kb on - strand, within H281DRAFT_02672 at 252.548 kb on - strand, within H281DRAFT_02672 at 253.445 kb on + strand, within H281DRAFT_02673 at 253.445 kb on + strand, within H281DRAFT_02673 at 253.683 kb on - strand, within H281DRAFT_02673 at 254.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 251,637 + -3.0 251,637 + -2.0 251,638 - -3.0 251,681 + +0.8 251,681 + -1.0 251,681 + -3.8 251,687 + -0.4 251,687 + -3.7 251,718 - +1.8 251,823 + +0.8 251,887 - H281DRAFT_02671 0.15 -3.9 251,902 + H281DRAFT_02671 0.18 +0.7 251,964 + H281DRAFT_02671 0.34 +0.1 251,964 + H281DRAFT_02671 0.34 +0.2 251,964 + H281DRAFT_02671 0.34 -0.0 251,964 + H281DRAFT_02671 0.34 +0.5 251,965 - H281DRAFT_02671 0.34 -3.3 251,965 - H281DRAFT_02671 0.34 +0.0 252,074 - H281DRAFT_02671 0.61 -3.3 252,143 + H281DRAFT_02671 0.78 +1.3 252,143 + +3.8 252,144 - H281DRAFT_02671 0.78 -3.1 252,395 + +0.7 252,449 - -1.0 252,547 + H281DRAFT_02672 0.18 +0.1 252,547 + H281DRAFT_02672 0.18 -0.0 252,547 + H281DRAFT_02672 0.18 +0.8 252,548 - H281DRAFT_02672 0.18 +0.8 252,548 - H281DRAFT_02672 0.18 -1.0 252,548 - H281DRAFT_02672 0.18 -2.3 253,445 + H281DRAFT_02673 0.18 -0.2 253,445 + H281DRAFT_02673 0.18 -0.5 253,683 - H281DRAFT_02673 0.50 -0.3 254,108 + -0.4
Or see this region's nucleotide sequence