Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01680 and BWI76_RS01685 are separated by 196 nucleotides BWI76_RS01685 and BWI76_RS01690 are separated by 185 nucleotides
BWI76_RS01680: BWI76_RS01680 - transcriptional regulator IclR, at 342,127 to 342,954
_RS01680
BWI76_RS01685: BWI76_RS01685 - methionine synthase, at 343,151 to 346,834
_RS01685
BWI76_RS01690: BWI76_RS01690 - membrane protein, at 347,020 to 348,651
_RS01690
Position (kb) 343
344
345
346
347 Strain fitness (log2 ratio) -1
0
1
2 at 342.297 kb on - strand, within BWI76_RS01680 at 342.302 kb on - strand, within BWI76_RS01680 at 342.323 kb on - strand, within BWI76_RS01680 at 342.379 kb on - strand, within BWI76_RS01680 at 342.413 kb on - strand, within BWI76_RS01680 at 342.525 kb on + strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.773 kb on + strand, within BWI76_RS01680 at 343.064 kb on - strand at 343.148 kb on + strand at 343.148 kb on + strand at 343.148 kb on + strand at 343.332 kb on - strand at 343.406 kb on - strand at 343.456 kb on + strand at 343.461 kb on + strand at 343.498 kb on + strand at 343.606 kb on + strand, within BWI76_RS01685 at 343.627 kb on + strand, within BWI76_RS01685 at 343.646 kb on - strand, within BWI76_RS01685 at 343.880 kb on + strand, within BWI76_RS01685 at 343.930 kb on - strand, within BWI76_RS01685 at 344.059 kb on + strand, within BWI76_RS01685 at 344.495 kb on - strand, within BWI76_RS01685 at 344.500 kb on - strand, within BWI76_RS01685 at 344.505 kb on - strand, within BWI76_RS01685 at 344.523 kb on + strand, within BWI76_RS01685 at 344.691 kb on - strand, within BWI76_RS01685 at 344.742 kb on + strand, within BWI76_RS01685 at 344.742 kb on + strand, within BWI76_RS01685 at 344.742 kb on + strand, within BWI76_RS01685 at 344.902 kb on - strand, within BWI76_RS01685 at 345.344 kb on + strand, within BWI76_RS01685 at 345.350 kb on - strand, within BWI76_RS01685 at 345.350 kb on - strand, within BWI76_RS01685 at 345.702 kb on - strand, within BWI76_RS01685 at 345.702 kb on - strand, within BWI76_RS01685 at 345.702 kb on - strand, within BWI76_RS01685 at 345.713 kb on - strand, within BWI76_RS01685 at 345.938 kb on + strand, within BWI76_RS01685 at 345.971 kb on - strand at 346.016 kb on - strand, within BWI76_RS01685 at 346.086 kb on - strand, within BWI76_RS01685 at 346.116 kb on - strand, within BWI76_RS01685 at 346.329 kb on + strand, within BWI76_RS01685 at 346.413 kb on - strand, within BWI76_RS01685 at 346.575 kb on + strand at 346.610 kb on - strand at 346.756 kb on - strand at 346.872 kb on + strand at 346.909 kb on + strand at 346.909 kb on + strand at 346.910 kb on - strand at 346.983 kb on - strand at 347.029 kb on + strand at 347.043 kb on - strand at 347.097 kb on - strand at 347.097 kb on - strand at 347.121 kb on - strand at 347.263 kb on + strand, within BWI76_RS01690 at 347.321 kb on + strand, within BWI76_RS01690 at 347.478 kb on - strand, within BWI76_RS01690 at 347.495 kb on - strand, within BWI76_RS01690 at 347.657 kb on - strand, within BWI76_RS01690 at 347.813 kb on - strand, within BWI76_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 342,297 - BWI76_RS01680 0.21 +1.0 342,302 - BWI76_RS01680 0.21 +0.2 342,323 - BWI76_RS01680 0.24 +0.3 342,379 - BWI76_RS01680 0.30 +0.2 342,413 - BWI76_RS01680 0.35 -0.4 342,525 + BWI76_RS01680 0.48 -0.6 342,533 - BWI76_RS01680 0.49 +0.3 342,533 - BWI76_RS01680 0.49 +0.5 342,773 + BWI76_RS01680 0.78 -0.7 343,064 - -1.3 343,148 + -0.2 343,148 + +0.6 343,148 + -0.5 343,332 - -0.3 343,406 - -0.6 343,456 + +0.2 343,461 + +0.5 343,498 + -0.2 343,606 + BWI76_RS01685 0.12 -1.0 343,627 + BWI76_RS01685 0.13 +0.9 343,646 - BWI76_RS01685 0.13 -0.5 343,880 + BWI76_RS01685 0.20 -0.5 343,930 - BWI76_RS01685 0.21 +1.6 344,059 + BWI76_RS01685 0.25 -0.5 344,495 - BWI76_RS01685 0.36 -0.5 344,500 - BWI76_RS01685 0.37 +1.7 344,505 - BWI76_RS01685 0.37 -0.1 344,523 + BWI76_RS01685 0.37 -0.1 344,691 - BWI76_RS01685 0.42 -0.7 344,742 + BWI76_RS01685 0.43 -0.6 344,742 + BWI76_RS01685 0.43 +0.3 344,742 + BWI76_RS01685 0.43 -0.1 344,902 - BWI76_RS01685 0.48 +0.2 345,344 + BWI76_RS01685 0.60 -1.6 345,350 - BWI76_RS01685 0.60 +1.8 345,350 - BWI76_RS01685 0.60 +1.1 345,702 - BWI76_RS01685 0.69 -0.2 345,702 - BWI76_RS01685 0.69 +1.6 345,702 - BWI76_RS01685 0.69 -0.5 345,713 - BWI76_RS01685 0.70 -0.0 345,938 + BWI76_RS01685 0.76 -0.6 345,971 - +1.0 346,016 - BWI76_RS01685 0.78 -0.4 346,086 - BWI76_RS01685 0.80 -0.7 346,116 - BWI76_RS01685 0.80 -1.2 346,329 + BWI76_RS01685 0.86 +0.8 346,413 - BWI76_RS01685 0.89 -0.4 346,575 + +1.0 346,610 - +1.3 346,756 - -0.6 346,872 + +1.3 346,909 + +0.4 346,909 + +0.3 346,910 - +0.5 346,983 - -0.2 347,029 + +0.7 347,043 - -0.1 347,097 - +0.1 347,097 - +0.3 347,121 - +0.2 347,263 + BWI76_RS01690 0.15 +0.3 347,321 + BWI76_RS01690 0.18 -0.4 347,478 - BWI76_RS01690 0.28 -0.6 347,495 - BWI76_RS01690 0.29 -0.1 347,657 - BWI76_RS01690 0.39 +1.1 347,813 - BWI76_RS01690 0.49 -0.1
Or see this region's nucleotide sequence