Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1416.1

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1415.1 and Xcc-8004.1416.1 are separated by 130 nucleotidesXcc-8004.1416.1 and Xcc-8004.1417.1 overlap by 1 nucleotidesXcc-8004.1417.1 and Xcc-8004.1418.1 are separated by 22 nucleotides Xcc-8004.1415.1: Xcc-8004.1415.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 1,350,216 to 1,352,597 Xcc-8004.1415.1 Xcc-8004.1416.1: Xcc-8004.1416.1 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 1,352,728 to 1,354,692 Xcc-8004.1416.1 Xcc-8004.1417.1: Xcc-8004.1417.1 - FIG01211647: hypothetical protein, at 1,354,692 to 1,355,243 Xcc-8004.1417.1 Xcc-8004.1418.1: Xcc-8004.1418.1 - Glycine cleavage system transcriptional activator, at 1,355,266 to 1,356,141 Xcc-8004.1418.1 Position (kb) 1352 1353 1354 1355Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1351.898 kb on - strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.002 kb on + strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.003 kb on - strand, within Xcc-8004.1415.1at 1352.027 kb on - strand, within Xcc-8004.1415.1at 1352.113 kb on + strand, within Xcc-8004.1415.1at 1352.114 kb on - strand, within Xcc-8004.1415.1at 1352.638 kb on + strandat 1352.638 kb on + strandat 1352.639 kb on - strandat 1352.694 kb on - strandat 1352.694 kb on - strandat 1352.697 kb on + strandat 1352.697 kb on + strandat 1352.698 kb on - strandat 1352.711 kb on - strandat 1352.711 kb on - strandat 1352.760 kb on - strandat 1352.760 kb on - strandat 1352.857 kb on + strandat 1353.143 kb on - strand, within Xcc-8004.1416.1at 1353.454 kb on + strand, within Xcc-8004.1416.1at 1353.454 kb on + strand, within Xcc-8004.1416.1at 1353.886 kb on - strand, within Xcc-8004.1416.1at 1354.378 kb on + strand, within Xcc-8004.1416.1at 1354.379 kb on - strand, within Xcc-8004.1416.1at 1354.585 kb on + strandat 1354.586 kb on - strandat 1354.690 kb on + strandat 1354.705 kb on - strandat 1354.705 kb on - strandat 1354.725 kb on + strandat 1354.725 kb on + strandat 1354.725 kb on + strandat 1354.726 kb on - strandat 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.013 kb on + strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.014 kb on - strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.019 kb on + strand, within Xcc-8004.1417.1at 1355.020 kb on - strand, within Xcc-8004.1417.1at 1355.020 kb on - strand, within Xcc-8004.1417.1at 1355.020 kb on - strand, within Xcc-8004.1417.1at 1355.020 kb on - strand, within Xcc-8004.1417.1at 1355.088 kb on + strand, within Xcc-8004.1417.1at 1355.088 kb on + strand, within Xcc-8004.1417.1at 1355.088 kb on + strand, within Xcc-8004.1417.1at 1355.089 kb on - strand, within Xcc-8004.1417.1at 1355.089 kb on - strand, within Xcc-8004.1417.1at 1355.089 kb on - strand, within Xcc-8004.1417.1at 1355.127 kb on + strand, within Xcc-8004.1417.1at 1355.128 kb on - strand, within Xcc-8004.1417.1at 1355.187 kb on + strand, within Xcc-8004.1417.1at 1355.187 kb on + strand, within Xcc-8004.1417.1at 1355.187 kb on + strand, within Xcc-8004.1417.1at 1355.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,351,898 - Xcc-8004.1415.1 0.71 +0.5
1,352,002 + Xcc-8004.1415.1 0.75 -1.4
1,352,002 + Xcc-8004.1415.1 0.75 -0.6
1,352,002 + Xcc-8004.1415.1 0.75 -0.0
1,352,002 + Xcc-8004.1415.1 0.75 -0.5
1,352,002 + Xcc-8004.1415.1 0.75 -0.8
1,352,002 + Xcc-8004.1415.1 0.75 +0.6
1,352,002 + Xcc-8004.1415.1 0.75 +1.5
1,352,003 - Xcc-8004.1415.1 0.75 -2.9
1,352,003 - Xcc-8004.1415.1 0.75 -1.0
1,352,003 - Xcc-8004.1415.1 0.75 +0.0
1,352,003 - Xcc-8004.1415.1 0.75 +0.7
1,352,003 - Xcc-8004.1415.1 0.75 -0.3
1,352,027 - Xcc-8004.1415.1 0.76 +0.2
1,352,113 + Xcc-8004.1415.1 0.80 -0.0
1,352,114 - Xcc-8004.1415.1 0.80 -2.5
1,352,638 + -0.2
1,352,638 + +0.3
1,352,639 - -1.7
1,352,694 - -2.6
1,352,694 - -1.9
1,352,697 + -0.2
1,352,697 + -2.1
1,352,698 - -1.9
1,352,711 - +1.7
1,352,711 - -3.2
1,352,760 - -0.6
1,352,760 - +1.2
1,352,857 + +0.3
1,353,143 - Xcc-8004.1416.1 0.21 +0.0
1,353,454 + Xcc-8004.1416.1 0.37 -1.7
1,353,454 + Xcc-8004.1416.1 0.37 -0.5
1,353,886 - Xcc-8004.1416.1 0.59 -1.0
1,354,378 + Xcc-8004.1416.1 0.84 -1.0
1,354,379 - Xcc-8004.1416.1 0.84 +0.1
1,354,585 + +1.9
1,354,586 - -0.6
1,354,690 + +2.3
1,354,705 - -2.2
1,354,705 - -1.3
1,354,725 + +1.1
1,354,725 + -0.7
1,354,725 + -1.3
1,354,726 - -0.2
1,355,013 + Xcc-8004.1417.1 0.58 +0.5
1,355,013 + Xcc-8004.1417.1 0.58 -0.0
1,355,013 + Xcc-8004.1417.1 0.58 +2.1
1,355,013 + Xcc-8004.1417.1 0.58 -0.4
1,355,013 + Xcc-8004.1417.1 0.58 +0.7
1,355,013 + Xcc-8004.1417.1 0.58 +0.4
1,355,013 + Xcc-8004.1417.1 0.58 -1.6
1,355,013 + Xcc-8004.1417.1 0.58 +0.1
1,355,013 + Xcc-8004.1417.1 0.58 -1.9
1,355,013 + Xcc-8004.1417.1 0.58 +0.3
1,355,013 + Xcc-8004.1417.1 0.58 +0.7
1,355,014 - Xcc-8004.1417.1 0.58 +1.7
1,355,014 - Xcc-8004.1417.1 0.58 +0.7
1,355,014 - Xcc-8004.1417.1 0.58 +0.7
1,355,014 - Xcc-8004.1417.1 0.58 +0.6
1,355,014 - Xcc-8004.1417.1 0.58 -1.1
1,355,014 - Xcc-8004.1417.1 0.58 +0.9
1,355,014 - Xcc-8004.1417.1 0.58 +0.6
1,355,014 - Xcc-8004.1417.1 0.58 +0.9
1,355,014 - Xcc-8004.1417.1 0.58 +1.6
1,355,014 - Xcc-8004.1417.1 0.58 +1.9
1,355,014 - Xcc-8004.1417.1 0.58 +0.1
1,355,014 - Xcc-8004.1417.1 0.58 -0.9
1,355,014 - Xcc-8004.1417.1 0.58 +0.7
1,355,014 - Xcc-8004.1417.1 0.58 -0.5
1,355,014 - Xcc-8004.1417.1 0.58 +1.6
1,355,014 - Xcc-8004.1417.1 0.58 +0.9
1,355,014 - Xcc-8004.1417.1 0.58 -2.7
1,355,019 + Xcc-8004.1417.1 0.59 -0.5
1,355,019 + Xcc-8004.1417.1 0.59 +0.4
1,355,019 + Xcc-8004.1417.1 0.59 -0.4
1,355,019 + Xcc-8004.1417.1 0.59 -1.4
1,355,019 + Xcc-8004.1417.1 0.59 -0.1
1,355,019 + Xcc-8004.1417.1 0.59 -0.7
1,355,019 + Xcc-8004.1417.1 0.59 +0.9
1,355,019 + Xcc-8004.1417.1 0.59 -0.7
1,355,020 - Xcc-8004.1417.1 0.59 +1.5
1,355,020 - Xcc-8004.1417.1 0.59 +0.3
1,355,020 - Xcc-8004.1417.1 0.59 +1.7
1,355,020 - Xcc-8004.1417.1 0.59 -0.3
1,355,088 + Xcc-8004.1417.1 0.72 +0.5
1,355,088 + Xcc-8004.1417.1 0.72 -0.3
1,355,088 + Xcc-8004.1417.1 0.72 -1.9
1,355,089 - Xcc-8004.1417.1 0.72 -0.0
1,355,089 - Xcc-8004.1417.1 0.72 -0.2
1,355,089 - Xcc-8004.1417.1 0.72 -0.8
1,355,127 + Xcc-8004.1417.1 0.79 -1.9
1,355,128 - Xcc-8004.1417.1 0.79 -0.9
1,355,187 + Xcc-8004.1417.1 0.90 -1.0
1,355,187 + Xcc-8004.1417.1 0.90 -1.1
1,355,187 + Xcc-8004.1417.1 0.90 -1.0
1,355,188 - -3.1

Or see this region's nucleotide sequence