Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01570 and PGA1_262p01580 are separated by 180 nucleotides PGA1_262p01580 and PGA1_262p01590 are separated by 28 nucleotides PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides PGA1_262p01600 and PGA1_262p01610 overlap by 4 nucleotides
PGA1_262p01570: PGA1_262p01570 - Domain of unknown function., at 173,441 to 175,663
_262p01570
PGA1_262p01580: PGA1_262p01580 - putative metal ion uptake regulator, at 175,844 to 176,230
_262p01580
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
Position (kb) 176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 175.295 kb on + strand, within PGA1_262p01570 at 175.295 kb on + strand, within PGA1_262p01570 at 175.301 kb on + strand, within PGA1_262p01570 at 175.306 kb on + strand, within PGA1_262p01570 at 175.560 kb on + strand at 175.583 kb on - strand at 175.732 kb on + strand at 175.828 kb on + strand at 175.857 kb on + strand at 175.885 kb on - strand, within PGA1_262p01580 at 176.150 kb on + strand, within PGA1_262p01580 at 176.308 kb on - strand at 176.309 kb on + strand at 176.425 kb on + strand, within PGA1_262p01590 at 176.425 kb on + strand, within PGA1_262p01590 at 176.494 kb on - strand, within PGA1_262p01590 at 176.514 kb on + strand, within PGA1_262p01590 at 176.539 kb on - strand, within PGA1_262p01590 at 176.544 kb on - strand, within PGA1_262p01590 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600 at 177.376 kb on + strand, within PGA1_262p01600 at 177.430 kb on - strand, within PGA1_262p01600 at 177.461 kb on - strand, within PGA1_262p01600 at 177.527 kb on - strand, within PGA1_262p01600 at 177.667 kb on + strand at 177.681 kb on + strand at 177.747 kb on + strand at 177.805 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.818 kb on - strand, within PGA1_262p01610 at 177.826 kb on + strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.869 kb on + strand, within PGA1_262p01610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 175,295 + PGA1_262p01570 0.83 +0.1 175,295 + PGA1_262p01570 0.83 +0.5 175,301 + PGA1_262p01570 0.84 +0.6 175,306 + PGA1_262p01570 0.84 +0.3 175,560 + -1.8 175,583 - -0.6 175,732 + -0.4 175,828 + -0.2 175,857 + -1.2 175,885 - PGA1_262p01580 0.11 -0.5 176,150 + PGA1_262p01580 0.79 -1.8 176,308 - -0.8 176,309 + +0.1 176,425 + PGA1_262p01590 0.25 +0.5 176,425 + PGA1_262p01590 0.25 -1.4 176,494 - PGA1_262p01590 0.35 -0.8 176,514 + PGA1_262p01590 0.38 +0.8 176,539 - PGA1_262p01590 0.42 -2.1 176,544 - PGA1_262p01590 0.42 -0.3 176,640 - PGA1_262p01590 0.57 -1.2 176,777 - PGA1_262p01590 0.77 +0.0 176,851 + PGA1_262p01590 0.88 -1.0 176,937 - +0.2 176,939 - -0.2 177,189 + PGA1_262p01600 0.36 -0.4 177,376 + PGA1_262p01600 0.63 -0.8 177,430 - PGA1_262p01600 0.71 -0.5 177,461 - PGA1_262p01600 0.75 +0.3 177,527 - PGA1_262p01600 0.85 +1.1 177,667 + -0.7 177,681 + -0.4 177,747 + -0.4 177,805 + PGA1_262p01610 0.14 +1.3 177,810 + PGA1_262p01610 0.14 -0.9 177,810 + PGA1_262p01610 0.14 +0.7 177,818 - PGA1_262p01610 0.15 -0.7 177,826 + PGA1_262p01610 0.16 +0.3 177,834 - PGA1_262p01610 0.16 -2.1 177,834 - PGA1_262p01610 0.16 +0.6 177,869 + PGA1_262p01610 0.19 -0.9
Or see this region's nucleotide sequence