Strain Fitness in Shewanella amazonensis SB2B around Sama_2356

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,830,554	-		Sama_2355	0.71	+1.5
2,830,554	-		Sama_2355	0.71	-1.7
2,830,556	+		Sama_2355	0.71	-0.1
2,830,556	+		Sama_2355	0.71	+1.5
2,830,556	+		Sama_2355	0.71	+1.2
2,830,556	+		Sama_2355	0.71	+0.5
2,830,556	+		Sama_2355	0.71	-1.5
2,830,556	+		Sama_2355	0.71	-1.7
2,830,556	+		Sama_2355	0.71	-2.4
2,830,556	+		Sama_2355	0.71	+1.5
2,830,556	+		Sama_2355	0.71	-1.4
2,830,557	-		Sama_2355	0.71	-0.3
2,830,557	-		Sama_2355	0.71	-0.1
2,830,557	-		Sama_2355	0.71	+2.9
2,830,557	-		Sama_2355	0.71	-0.6
2,830,557	-		Sama_2355	0.71	+1.5
2,830,557	-		Sama_2355	0.71	+1.5
2,830,557	-		Sama_2355	0.71	-0.4
2,830,557	-		Sama_2355	0.71	+1.6
2,830,557	-		Sama_2355	0.71	-1.5
2,830,559	+		Sama_2355	0.71	-1.4
2,830,559	+		Sama_2355	0.71	+2.5
2,830,559	+		Sama_2355	0.71	-1.1
2,830,560	-		Sama_2355	0.71	-1.1
2,830,560	-		Sama_2355	0.71	-1.7
2,830,560	-		Sama_2355	0.71	-0.9
2,830,560	-		Sama_2355	0.71	+0.7
2,830,560	-		Sama_2355	0.71	-0.1
2,830,560	-		Sama_2355	0.71	+0.5
2,830,560	-		Sama_2355	0.71	+0.2
2,830,560	-		Sama_2355	0.71	-0.9
2,830,560	-		Sama_2355	0.71	-1.7
2,830,603	-		Sama_2355	0.72	+0.0
2,830,629	+		Sama_2355	0.73	-1.9
2,830,647	+		Sama_2355	0.73	-1.7
2,830,731	-		Sama_2355	0.76	-1.1
2,830,756	-		Sama_2355	0.77	-0.5
2,830,756	-		Sama_2355	0.77	-1.1
2,830,767	+		Sama_2355	0.77	+1.5
2,830,767	+		Sama_2355	0.77	+3.3
2,830,873	-		Sama_2355	0.80	-2.5
2,830,926	+		Sama_2355	0.82	+0.6
2,830,926	+		Sama_2355	0.82	+0.0
2,830,927	-		Sama_2355	0.82	-1.1
2,830,927	-		Sama_2355	0.82	-0.1
2,830,927	-		Sama_2355	0.82	+0.0
2,830,927	-		Sama_2355	0.82	-0.5
2,830,940	+		Sama_2355	0.82	-1.4
2,830,971	+		Sama_2355	0.83	-0.5
2,831,007	+		Sama_2355	0.84	+1.8
2,831,007	+		Sama_2355	0.84	-1.7
2,831,007	+		Sama_2355	0.84	-0.1
2,831,007	+		Sama_2355	0.84	-0.9
2,831,007	+		Sama_2355	0.84	-0.1
2,831,008	-		Sama_2355	0.84	-1.0
2,831,008	-		Sama_2355	0.84	+3.2
2,831,008	-		Sama_2355	0.84	+0.8
2,831,008	-		Sama_2355	0.84	+1.6
2,831,008	-		Sama_2355	0.84	-0.4
2,831,013	+		Sama_2355	0.84	-0.9
2,831,013	+		Sama_2355	0.84	+1.2
2,831,014	-		Sama_2355	0.84	+0.5
2,831,014	-		Sama_2355	0.84	-2.0
2,831,014	-		Sama_2355	0.84	+0.5
2,831,016	+		Sama_2355	0.84	-1.1
2,831,016	+		Sama_2355	0.84	+2.4
2,831,016	+		Sama_2355	0.84	-0.1
2,831,017	-		Sama_2355	0.84	+1.7
2,831,017	-		Sama_2355	0.84	+1.5
2,831,037	-		Sama_2355	0.85	+1.9
2,831,053	+		Sama_2355	0.86	-2.4
2,831,053	+		Sama_2355	0.86	-0.1
2,831,053	+		Sama_2355	0.86	-0.9
2,831,053	+		Sama_2355	0.86	+1.5
2,831,054	-		Sama_2355	0.86	-2.0
2,831,054	-		Sama_2355	0.86	-0.9
2,831,054	-		Sama_2355	0.86	-1.1
2,831,073	+		Sama_2355	0.86	+1.5
2,831,074	-		Sama_2355	0.86	+1.1
2,831,074	-		Sama_2355	0.86	+0.5
2,831,074	-		Sama_2355	0.86	+0.8
2,831,074	-		Sama_2355	0.86	-1.7
2,831,078	+		Sama_2355	0.86	+0.2
2,831,118	+		Sama_2355	0.87	-1.5
2,831,147	+		Sama_2355	0.88	+1.5
2,831,147	+		Sama_2355	0.88	-1.4
2,831,147	+		Sama_2355	0.88	+1.0
2,831,147	+		Sama_2355	0.88	-1.4
2,831,147	+		Sama_2355	0.88	+1.0
2,831,148	-		Sama_2355	0.88	+0.9
2,831,148	-		Sama_2355	0.88	-1.4
2,831,148	-		Sama_2355	0.88	-0.3
2,831,172	+		Sama_2355	0.89	-0.5
2,831,172	+		Sama_2355	0.89	+1.9
2,831,173	-		Sama_2355	0.89	-0.5
2,831,173	-		Sama_2355	0.89	+1.5
2,831,177	+		Sama_2355	0.89	-2.0
2,831,177	+		Sama_2355	0.89	+0.8
2,831,177	+		Sama_2355	0.89	-0.1
2,831,178	-		Sama_2355	0.89	-1.4
2,831,181	+		Sama_2355	0.89	+2.5
2,831,181	+		Sama_2355	0.89	-2.4
2,831,181	+		Sama_2355	0.89	+2.4
2,831,182	-		Sama_2355	0.89	+1.5
2,831,182	-		Sama_2355	0.89	-0.9
2,831,228	-				-1.4
2,831,235	+				+4.1
2,831,235	+				+2.1
2,831,235	+				-0.5
2,831,236	-				-1.2
2,831,236	-				+0.8
2,831,236	-				+0.7
2,831,236	-				-2.2
2,831,236	-				-0.5
2,831,236	-				-0.9
2,831,236	-				+1.1
2,831,236	-				+4.1
2,831,236	-				+1.3
2,831,236	-				+2.8
2,831,325	-				-0.3
2,831,339	+				-0.4
2,831,352	+				+2.4
2,831,352	+				-0.9
2,831,352	+				+0.5
2,831,353	-				-0.4
2,831,353	-				-2.4
2,831,372	+				+1.5
2,831,372	+				-2.4
2,831,372	+				+2.5
2,831,372	+				+0.2
2,831,373	-				+0.1
2,831,373	-				+1.9
2,831,373	-				-1.5
2,831,373	-				-1.2
2,831,373	-				+0.7
2,831,373	-				+2.7
2,831,384	+				+4.3
2,831,418	-				+2.9
2,831,418	-				+1.0
2,831,441	+				-0.1
2,831,441	+				+0.4
2,831,442	-				+0.5
2,831,442	-				-1.7
2,831,442	-				-0.5
2,831,447	+				+0.7
2,831,447	+				-0.5
2,831,447	+				+1.6
2,831,447	+				+0.1
2,831,447	+				+2.5
2,831,447	+				-1.1
2,831,447	+				+1.5
2,831,448	-				-1.1
2,831,448	-				+1.5
2,831,448	-				-0.9
2,831,451	+				+2.2
2,831,451	+				+1.6
2,831,451	+				+0.1
2,831,451	+				+0.1
2,831,451	+				+0.4
2,831,451	+				+2.7
2,831,451	+				-0.3
2,831,452	-				-0.2
2,831,452	-				+1.6
2,831,452	-				-0.5
2,831,582	+				+0.5
2,831,583	-				-0.4
2,831,598	+		Sama_2356	0.11	-1.0
2,831,599	-		Sama_2356	0.12	-0.9
2,831,599	-		Sama_2356	0.12	-2.0
2,831,599	-		Sama_2356	0.12	+1.5
2,831,604	+		Sama_2356	0.13	+1.8
2,831,664	+		Sama_2356	0.25	+0.1
2,831,664	+		Sama_2356	0.25	-1.4
2,831,665	-		Sama_2356	0.25	+0.6
2,831,665	-		Sama_2356	0.25	+1.6
2,831,683	+		Sama_2356	0.28	+3.9
2,831,684	-		Sama_2356	0.29	+3.0
2,831,699	+		Sama_2356	0.32	-0.5
2,831,699	+		Sama_2356	0.32	+2.5
2,831,699	+		Sama_2356	0.32	-2.2
2,831,699	+		Sama_2356	0.32	-1.7
2,831,699	+		Sama_2356	0.32	-0.5
2,831,700	-		Sama_2356	0.32	+3.8
2,831,700	-		Sama_2356	0.32	-0.2
2,831,741	-		Sama_2356	0.40	-1.4
2,831,858	-		Sama_2356	0.64	+0.6
2,831,871	+		Sama_2356	0.66	-0.1
2,831,871	+		Sama_2356	0.66	-0.9
2,831,914	-		Sama_2356	0.75	+0.8
2,831,914	-		Sama_2356	0.75	+1.6
2,831,914	-		Sama_2356	0.75	-0.4
2,831,928	+		Sama_2356	0.78	+1.5
2,831,928	+		Sama_2356	0.78	-0.1
2,831,928	+		Sama_2356	0.78	+0.9
2,831,929	-		Sama_2356	0.78	+0.6
2,831,929	-		Sama_2356	0.78	+2.1
2,831,996	-				-0.9
2,831,996	-				+1.0
2,831,996	-				+0.9
2,832,004	+				+0.5
2,832,005	-				-0.0
2,832,005	-				-1.1
2,832,029	-				+0.3
2,832,037	+				+1.5
2,832,060	+				-0.7
2,832,060	+				+1.6
2,832,060	+				-1.4
2,832,061	-				+2.2
2,832,083	+				-2.0
2,832,086	+				+1.7
2,832,086	+				+0.5
2,832,087	-				+0.9
2,832,093	+				-2.4
2,832,106	-				-0.9
2,832,156	+				-1.1
2,832,156	+				+1.6
2,832,157	-				-1.1
2,832,233	+		Sama_2357	0.19	+2.9
2,832,233	+		Sama_2357	0.19	+0.6
2,832,335	+		Sama_2357	0.54	-0.3
2,832,411	+		Sama_2357	0.80	-0.4
2,832,411	+		Sama_2357	0.80	-0.9
2,832,411	+		Sama_2357	0.80	-0.1
2,832,411	+		Sama_2357	0.80	+2.0
2,832,411	+		Sama_2357	0.80	+1.5
2,832,412	-		Sama_2357	0.80	-0.0
2,832,427	+		Sama_2357	0.86	+3.0
2,832,454	-				-1.5
2,832,454	-				+0.6
2,832,466	+				-2.0
2,832,466	+				+0.9
2,832,467	-				-1.4
2,832,478	-				-2.0
2,832,532	+				+0.7
2,832,532	+				-0.2
2,832,533	-				-1.4
2,832,533	-				+1.7