Strain Fitness in Pseudomonas putida KT2440 around PP_0871

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
1,009,403	+				-0.9
1,009,404	-				-1.3
1,009,404	-				+0.5
1,009,605	+		PP_0870	0.22	-0.3
1,009,831	+		PP_0870	0.46	+0.1
1,009,831	+		PP_0870	0.46	-0.3
1,009,832	-		PP_0870	0.46	-0.7
1,009,832	-		PP_0870	0.46	+0.5
1,009,926	+		PP_0870	0.56	+0.5
1,009,926	+		PP_0870	0.56	+0.6
1,009,927	-		PP_0870	0.57	-0.7
1,009,927	-		PP_0870	0.57	+0.6
1,009,927	-		PP_0870	0.57	+1.0
1,009,927	-		PP_0870	0.57	-0.2
1,009,927	-		PP_0870	0.57	-1.1
1,009,998	+		PP_0870	0.64	+0.7
1,009,999	-		PP_0870	0.64	-0.5
1,010,020	+		PP_0870	0.66	-0.8
1,010,020	+		PP_0870	0.66	+0.9
1,010,021	-		PP_0870	0.67	-0.3
1,010,041	-		PP_0870	0.69	-0.9
1,010,065	-		PP_0870	0.71	+0.2
1,010,167	-		PP_0870	0.82	-0.5
1,010,321	-				+0.4
1,010,321	-				-0.8
1,010,532	+		PP_0871	0.29	-1.7
1,010,657	-		PP_0871	0.45	-1.4
1,010,657	-		PP_0871	0.45	-1.3
1,010,733	-		PP_0871	0.56	+0.7
1,010,733	-		PP_0871	0.56	-0.2
1,010,733	-		PP_0871	0.56	-0.2
1,010,832	+		PP_0871	0.69	+1.5
1,010,892	+		PP_0871	0.77	-1.3
1,010,911	+		PP_0871	0.80	-1.8
1,010,911	+		PP_0871	0.80	-1.6
1,010,911	+		PP_0871	0.80	-0.4
1,010,911	+		PP_0871	0.80	-0.5
1,010,912	-		PP_0871	0.80	+0.4
1,011,049	+				-0.3
1,011,237	+				-0.6
1,011,238	-				-0.1
1,011,428	+				+0.1
1,011,429	-				+0.2
1,011,462	+				+1.1
1,011,463	-				-0.5
1,011,546	+				-1.6
1,011,551	+				+0.2
1,011,551	+				-0.8
1,011,551	+				+0.1
1,011,551	+				-0.1
1,011,657	+				+0.5
1,011,880	+		PP_0872	0.18	-0.0
1,011,881	-		PP_0872	0.18	-1.0
1,011,930	+		PP_0872	0.22	-2.0
1,011,938	+		PP_0872	0.22	+0.3