Experiment: BC Lignin Sorghum 10 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0693 and PP_0694 overlap by 4 nucleotides PP_0694 and PP_0695 overlap by 11 nucleotides
PP_0693: PP_0693 - conserved protein of unknown function, at 804,498 to 807,329
_0693
PP_0694: PP_0694 - conserved protein of unknown function, at 807,326 to 808,033
_0694
PP_0695: PP_0695 - conserved protein of unknown function, at 808,023 to 809,357
_0695
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.366 kb on + strand, within PP_0693 at 806.367 kb on - strand, within PP_0693 at 806.488 kb on + strand, within PP_0693 at 806.489 kb on - strand, within PP_0693 at 806.489 kb on - strand, within PP_0693 at 806.489 kb on - strand, within PP_0693 at 806.489 kb on - strand, within PP_0693 at 806.620 kb on + strand, within PP_0693 at 806.621 kb on - strand, within PP_0693 at 806.621 kb on - strand, within PP_0693 at 806.621 kb on - strand, within PP_0693 at 806.640 kb on + strand, within PP_0693 at 806.640 kb on + strand, within PP_0693 at 806.641 kb on - strand, within PP_0693 at 806.675 kb on - strand, within PP_0693 at 806.899 kb on + strand, within PP_0693 at 806.900 kb on - strand, within PP_0693 at 806.900 kb on - strand, within PP_0693 at 806.998 kb on + strand, within PP_0693 at 806.998 kb on + strand, within PP_0693 at 806.998 kb on + strand, within PP_0693 at 806.999 kb on - strand, within PP_0693 at 807.094 kb on + strand at 807.095 kb on - strand at 807.095 kb on - strand at 807.095 kb on - strand at 807.115 kb on + strand at 807.142 kb on + strand at 807.142 kb on + strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.213 kb on - strand at 807.232 kb on + strand at 807.232 kb on + strand at 807.314 kb on - strand at 807.573 kb on + strand, within PP_0694 at 807.573 kb on + strand, within PP_0694 at 807.573 kb on + strand, within PP_0694 at 807.681 kb on + strand, within PP_0694 at 807.681 kb on + strand, within PP_0694 at 807.849 kb on + strand, within PP_0694 at 807.849 kb on + strand, within PP_0694 at 807.850 kb on - strand, within PP_0694 at 807.853 kb on - strand, within PP_0694 at 807.939 kb on + strand, within PP_0694 at 807.940 kb on - strand, within PP_0694 at 807.940 kb on - strand, within PP_0694 at 808.058 kb on + strand at 808.136 kb on - strand at 808.198 kb on + strand, within PP_0695 at 808.199 kb on - strand, within PP_0695 at 808.199 kb on - strand, within PP_0695 at 808.390 kb on + strand, within PP_0695 at 808.391 kb on - strand, within PP_0695 at 808.396 kb on + strand, within PP_0695 at 808.719 kb on + strand, within PP_0695 at 808.719 kb on + strand, within PP_0695 at 808.719 kb on + strand, within PP_0695 at 808.720 kb on - strand, within PP_0695 at 808.774 kb on + strand, within PP_0695 at 808.775 kb on - strand, within PP_0695 at 808.805 kb on - strand, within PP_0695
Per-strain Table
Position Strand Gene LocusTag Fraction BC Lignin Sorghum 10 vol% (C) remove 806,366 + PP_0693 0.66 +0.1 806,367 - PP_0693 0.66 +0.1 806,488 + PP_0693 0.70 +0.1 806,489 - PP_0693 0.70 -0.2 806,489 - PP_0693 0.70 -3.2 806,489 - PP_0693 0.70 -0.2 806,489 - PP_0693 0.70 +0.3 806,620 + PP_0693 0.75 -1.0 806,621 - PP_0693 0.75 +0.9 806,621 - PP_0693 0.75 +0.3 806,621 - PP_0693 0.75 +0.8 806,640 + PP_0693 0.76 -0.3 806,640 + PP_0693 0.76 -0.1 806,641 - PP_0693 0.76 -0.1 806,675 - PP_0693 0.77 -2.3 806,899 + PP_0693 0.85 +0.3 806,900 - PP_0693 0.85 -1.3 806,900 - PP_0693 0.85 -2.6 806,998 + PP_0693 0.88 +0.4 806,998 + PP_0693 0.88 -1.0 806,998 + PP_0693 0.88 -0.7 806,999 - PP_0693 0.88 -0.1 807,094 + +0.3 807,095 - -0.3 807,095 - -0.0 807,095 - +0.3 807,115 + -1.9 807,142 + -0.8 807,142 + +0.1 807,143 - -0.8 807,143 - -0.8 807,143 - +1.3 807,143 - -1.9 807,213 - -0.2 807,232 + -3.5 807,232 + -1.0 807,314 - -0.2 807,573 + PP_0694 0.35 -0.9 807,573 + PP_0694 0.35 -1.0 807,573 + PP_0694 0.35 -0.7 807,681 + PP_0694 0.50 +0.5 807,681 + PP_0694 0.50 -0.6 807,849 + PP_0694 0.74 -1.1 807,849 + PP_0694 0.74 +1.9 807,850 - PP_0694 0.74 -3.0 807,853 - PP_0694 0.74 -0.8 807,939 + PP_0694 0.87 -0.1 807,940 - PP_0694 0.87 -0.8 807,940 - PP_0694 0.87 -0.6 808,058 + -0.3 808,136 - +0.6 808,198 + PP_0695 0.13 -0.4 808,199 - PP_0695 0.13 -0.2 808,199 - PP_0695 0.13 +0.6 808,390 + PP_0695 0.27 -0.3 808,391 - PP_0695 0.28 +0.6 808,396 + PP_0695 0.28 -0.6 808,719 + PP_0695 0.52 -0.2 808,719 + PP_0695 0.52 -0.8 808,719 + PP_0695 0.52 -1.0 808,720 - PP_0695 0.52 -2.7 808,774 + PP_0695 0.56 -1.2 808,775 - PP_0695 0.56 -1.5 808,805 - PP_0695 0.59 +0.4
Or see this region's nucleotide sequence