Experiment: BC Lignin Sorghum 10 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0312 and PP_0313 are separated by 10 nucleotides PP_0313 and PP_0314 are separated by 601 nucleotides
PP_0312: PP_0312 - electron transfer flavoprotein, alpha subunit, at 374,711 to 375,943
_0312
PP_0313: PP_0313 - putative electron transfer flavoprotein beta subunit, at 375,954 to 376,724
_0313
PP_0314: PP_0314 - conserved protein of unknown function, at 377,326 to 378,057
_0314
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1 at 374.990 kb on + strand, within PP_0312 at 374.990 kb on + strand, within PP_0312 at 374.990 kb on + strand, within PP_0312 at 374.991 kb on - strand, within PP_0312 at 374.991 kb on - strand, within PP_0312 at 374.991 kb on - strand, within PP_0312 at 374.991 kb on - strand, within PP_0312 at 375.185 kb on + strand, within PP_0312 at 375.358 kb on + strand, within PP_0312 at 375.615 kb on - strand, within PP_0312 at 375.737 kb on + strand, within PP_0312 at 375.737 kb on + strand, within PP_0312 at 375.738 kb on - strand, within PP_0312 at 375.738 kb on - strand, within PP_0312 at 375.912 kb on - strand at 375.912 kb on - strand at 375.941 kb on + strand at 375.942 kb on - strand at 375.959 kb on + strand at 376.070 kb on + strand, within PP_0313 at 376.201 kb on - strand, within PP_0313 at 376.201 kb on - strand, within PP_0313 at 376.736 kb on + strand at 376.736 kb on + strand at 376.842 kb on - strand at 376.861 kb on - strand at 376.937 kb on + strand at 376.937 kb on + strand at 377.075 kb on - strand at 377.205 kb on + strand at 377.267 kb on + strand at 377.267 kb on + strand at 377.267 kb on + strand at 377.291 kb on - strand at 377.312 kb on + strand at 377.312 kb on + strand at 377.313 kb on - strand at 377.313 kb on - strand at 377.398 kb on + strand at 377.407 kb on + strand, within PP_0314 at 377.408 kb on - strand, within PP_0314 at 377.423 kb on + strand, within PP_0314 at 377.478 kb on + strand, within PP_0314 at 377.478 kb on + strand, within PP_0314 at 377.478 kb on + strand, within PP_0314 at 377.479 kb on - strand, within PP_0314 at 377.479 kb on - strand, within PP_0314 at 377.479 kb on - strand, within PP_0314 at 377.479 kb on - strand, within PP_0314 at 377.482 kb on + strand at 377.482 kb on + strand, within PP_0314 at 377.483 kb on - strand, within PP_0314 at 377.510 kb on - strand, within PP_0314 at 377.534 kb on + strand, within PP_0314 at 377.534 kb on + strand, within PP_0314 at 377.549 kb on + strand, within PP_0314 at 377.581 kb on + strand, within PP_0314 at 377.581 kb on + strand, within PP_0314 at 377.581 kb on + strand, within PP_0314 at 377.622 kb on + strand, within PP_0314 at 377.684 kb on + strand, within PP_0314 at 377.684 kb on + strand, within PP_0314 at 377.684 kb on + strand, within PP_0314 at 377.685 kb on - strand, within PP_0314 at 377.685 kb on - strand, within PP_0314 at 377.685 kb on - strand, within PP_0314 at 377.689 kb on - strand, within PP_0314 at 377.690 kb on + strand, within PP_0314 at 377.690 kb on + strand, within PP_0314 at 377.690 kb on + strand, within PP_0314 at 377.690 kb on + strand, within PP_0314 at 377.690 kb on + strand, within PP_0314 at 377.691 kb on - strand, within PP_0314 at 377.691 kb on - strand, within PP_0314 at 377.691 kb on - strand, within PP_0314 at 377.716 kb on + strand, within PP_0314 at 377.716 kb on + strand, within PP_0314 at 377.721 kb on + strand, within PP_0314 at 377.721 kb on + strand, within PP_0314 at 377.721 kb on + strand, within PP_0314 at 377.722 kb on - strand, within PP_0314 at 377.722 kb on - strand, within PP_0314
Per-strain Table
Position Strand Gene LocusTag Fraction BC Lignin Sorghum 10 vol% (C) remove 374,990 + PP_0312 0.23 -0.1 374,990 + PP_0312 0.23 -1.3 374,990 + PP_0312 0.23 -0.9 374,991 - PP_0312 0.23 -0.4 374,991 - PP_0312 0.23 -0.9 374,991 - PP_0312 0.23 +0.0 374,991 - PP_0312 0.23 -0.5 375,185 + PP_0312 0.38 -0.2 375,358 + PP_0312 0.52 -1.2 375,615 - PP_0312 0.73 +0.7 375,737 + PP_0312 0.83 +0.3 375,737 + PP_0312 0.83 -0.3 375,738 - PP_0312 0.83 -1.1 375,738 - PP_0312 0.83 -0.1 375,912 - -0.1 375,912 - +0.9 375,941 + +0.4 375,942 - -0.8 375,959 + -0.3 376,070 + PP_0313 0.15 -0.9 376,201 - PP_0313 0.32 -1.3 376,201 - PP_0313 0.32 -0.0 376,736 + +0.1 376,736 + +0.6 376,842 - -0.3 376,861 - +0.1 376,937 + -1.3 376,937 + +0.1 377,075 - +0.1 377,205 + +0.8 377,267 + +0.2 377,267 + -0.0 377,267 + +0.1 377,291 - -1.0 377,312 + -0.7 377,312 + -1.3 377,313 - +0.5 377,313 - -1.9 377,398 + -0.2 377,407 + PP_0314 0.11 -0.9 377,408 - PP_0314 0.11 -0.1 377,423 + PP_0314 0.13 -0.3 377,478 + PP_0314 0.21 +0.5 377,478 + PP_0314 0.21 +0.2 377,478 + PP_0314 0.21 +0.6 377,479 - PP_0314 0.21 -0.9 377,479 - PP_0314 0.21 +0.3 377,479 - PP_0314 0.21 -0.1 377,479 - PP_0314 0.21 -0.9 377,482 + -0.2 377,482 + PP_0314 0.21 -0.2 377,483 - PP_0314 0.21 +0.2 377,510 - PP_0314 0.25 +0.5 377,534 + PP_0314 0.28 +0.4 377,534 + PP_0314 0.28 -0.3 377,549 + PP_0314 0.30 -1.0 377,581 + PP_0314 0.35 -1.3 377,581 + PP_0314 0.35 -1.1 377,581 + PP_0314 0.35 +1.1 377,622 + PP_0314 0.40 +0.7 377,684 + PP_0314 0.49 -1.3 377,684 + PP_0314 0.49 +0.3 377,684 + PP_0314 0.49 +0.8 377,685 - PP_0314 0.49 -1.3 377,685 - PP_0314 0.49 -0.0 377,685 - PP_0314 0.49 -0.7 377,689 - PP_0314 0.50 +0.7 377,690 + PP_0314 0.50 -0.9 377,690 + PP_0314 0.50 +0.1 377,690 + PP_0314 0.50 +0.1 377,690 + PP_0314 0.50 +0.1 377,690 + PP_0314 0.50 +0.6 377,691 - PP_0314 0.50 -0.6 377,691 - PP_0314 0.50 -0.3 377,691 - PP_0314 0.50 -0.5 377,716 + PP_0314 0.53 +0.0 377,716 + PP_0314 0.53 +0.1 377,721 + PP_0314 0.54 -1.9 377,721 + PP_0314 0.54 -1.1 377,721 + PP_0314 0.54 -1.6 377,722 - PP_0314 0.54 -2.2 377,722 - PP_0314 0.54 -0.4
Or see this region's nucleotide sequence