Strain Fitness in Pseudomonas putida KT2440 around PP_0007

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
8,209	-		PP_0007	0.22	+0.1
8,209	-		PP_0007	0.22	-1.1
8,299	-				-0.0
8,299	-		PP_0007	0.58	-0.9
8,354	-		PP_0007	0.80	-0.1
8,396	-				-2.9
9,056	-				+0.8
9,058	-				-0.4
9,058	-				+0.4
9,058	-				-0.6
9,058	-				-0.1
9,152	+				-0.3
9,154	+				-0.0
9,154	+				+0.4
9,155	-				+0.8
9,177	-				+0.5
9,186	-				-1.6
9,238	+				-1.0
9,238	+				-0.8
9,249	-				-1.7
9,395	-				-2.6