Strain Fitness in Pseudomonas putida KT2440 around PP_0005

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
4,416	-				+0.3
4,428	-				-0.1
4,428	-				-0.8
4,428	-				-0.0
4,544	+				+1.0
4,550	+				-2.2
4,550	+				-0.7
4,551	-				-0.7
4,590	+				-1.0
4,603	+				+0.3
4,603	+				-0.4
4,604	-				-0.6
4,614	+				+0.8
4,615	-				+2.7
4,672	+				+0.8
4,673	-				+0.1
4,723	+				-0.4
4,853	+				-1.2
4,853	+				-0.1
4,853	+				-0.9
4,853	+				+1.0
4,853	+				-0.2
4,853	+				+0.2
4,853	+				-0.2
4,854	-				-1.1
4,854	-				-0.1
4,854	-				-2.4
4,854	-				+0.1
4,854	-				-0.6
4,854	-				+0.8
4,854	-				-0.4
4,878	+				+0.8
4,878	+				+0.2
4,878	+				-0.7
4,878	+				+0.1
4,878	+				-0.3
4,878	+				-2.6
4,879	-				-1.3
4,879	-				-0.9
4,879	-				-0.4
4,879	-				-0.5
4,879	-				-0.6
4,979	-				-0.2
5,014	-				-1.7
6,397	-				-0.2
6,415	-				+0.6
6,462	-				-1.3
6,462	-				-0.4
6,462	-				-0.5
6,462	-				+0.7
6,462	-				+0.8
6,462	-				-1.1
6,465	-				-0.6
6,492	-				-2.4