Strain Fitness in Pseudomonas putida KT2440 around PP_0004

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
1,594	+		PP_0002	0.71	-0.2
1,595	-		PP_0002	0.71	-1.0
1,602	-		PP_0002	0.72	-1.9
1,639	+		PP_0002	0.77	+1.2
1,639	+		PP_0002	0.77	-0.0
1,760	+				-1.0
1,760	+				-0.6
1,760	+				-1.8
1,760	+				+1.1
1,761	-				-0.5
1,761	-				-1.9
1,761	-				+1.0
1,761	-				-1.9
1,761	-				-2.1
1,809	+				+0.7
1,809	+				-0.2
1,810	-				+0.2
1,810	-				-0.6
1,814	+				+2.7
1,815	-				-1.2
1,939	-		PP_0003	0.15	-2.7
2,258	+		PP_0003	0.64	-1.7
2,258	+		PP_0003	0.64	-1.7
2,259	-		PP_0003	0.65	+0.6
2,291	+		PP_0003	0.69	+1.7
2,291	+		PP_0003	0.69	-0.6
2,353	+		PP_0003	0.79	-0.3
2,353	+		PP_0003	0.79	-0.7
2,354	-		PP_0003	0.79	-1.9
4,416	-				+0.3
4,428	-				-0.1
4,428	-				-0.8
4,428	-				-0.0
4,544	+				+1.0
4,550	+				-2.2
4,550	+				-0.7
4,551	-				-0.7
4,590	+				-1.0
4,603	+				+0.3
4,603	+				-0.4
4,604	-				-0.6
4,614	+				+0.8
4,615	-				+2.7
4,672	+				+0.8
4,673	-				+0.1
4,723	+				-0.4
4,853	+				-1.2
4,853	+				-0.1
4,853	+				-0.9
4,853	+				+1.0
4,853	+				-0.2
4,853	+				+0.2
4,853	+				-0.2
4,854	-				-1.1
4,854	-				-0.1
4,854	-				-2.4
4,854	-				+0.1
4,854	-				-0.6
4,854	-				+0.8
4,854	-				-0.4
4,878	+				+0.8
4,878	+				+0.2
4,878	+				-0.7
4,878	+				+0.1
4,878	+				-0.3
4,878	+				-2.6
4,879	-				-1.3
4,879	-				-0.9
4,879	-				-0.4
4,879	-				-0.5
4,879	-				-0.6
4,979	-				-0.2
5,014	-				-1.7