Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01280 and PFLU_RS01285 are separated by 116 nucleotides PFLU_RS01285 and PFLU_RS01290 are separated by 70 nucleotides PFLU_RS01290 and PFLU_RS01295 overlap by 4 nucleotides
PFLU_RS01280: PFLU_RS01280 - two-component system response regulator OmpR, at 285,576 to 286,316
_RS01280
PFLU_RS01285: PFLU_RS01285 - HAMP domain-containing protein, at 286,433 to 287,746
_RS01285
PFLU_RS01290: PFLU_RS01290 - 30S ribosomal protein S6--L-glutamate ligase, at 287,817 to 288,722
_RS01290
PFLU_RS01295: PFLU_RS01295 - ATP-dependent zinc protease, at 288,719 to 289,201
_RS01295
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 285.470 kb on + strand at 285.470 kb on + strand at 285.471 kb on - strand at 285.471 kb on - strand at 285.471 kb on - strand at 285.492 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.527 kb on + strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.528 kb on - strand at 285.529 kb on + strand at 285.530 kb on - strand at 285.539 kb on + strand at 285.539 kb on + strand at 285.539 kb on + strand at 285.539 kb on + strand at 285.539 kb on + strand at 285.540 kb on - strand at 285.540 kb on - strand at 285.546 kb on + strand at 285.546 kb on + strand at 285.547 kb on - strand at 285.561 kb on + strand at 285.561 kb on + strand at 285.561 kb on + strand at 285.562 kb on - strand at 285.562 kb on - strand at 286.304 kb on + strand at 286.304 kb on + strand at 286.304 kb on + strand at 286.304 kb on + strand at 286.304 kb on + strand at 286.417 kb on + strand at 286.417 kb on + strand at 286.417 kb on + strand at 286.417 kb on + strand at 286.417 kb on + strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.418 kb on - strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.421 kb on + strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.422 kb on - strand at 286.433 kb on - strand at 286.433 kb on - strand at 286.876 kb on - strand, within PFLU_RS01285 at 286.876 kb on - strand, within PFLU_RS01285 at 286.876 kb on - strand, within PFLU_RS01285 at 286.876 kb on - strand, within PFLU_RS01285 at 286.876 kb on - strand, within PFLU_RS01285 at 287.280 kb on + strand, within PFLU_RS01285 at 287.731 kb on + strand at 287.732 kb on - strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.745 kb on - strand at 287.745 kb on - strand at 287.745 kb on - strand at 287.766 kb on - strand at 287.814 kb on + strand at 287.814 kb on + strand at 287.815 kb on - strand at 287.815 kb on - strand at 287.843 kb on + strand at 287.843 kb on + strand at 287.844 kb on - strand at 288.048 kb on + strand, within PFLU_RS01290 at 288.049 kb on - strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.187 kb on + strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.188 kb on - strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.508 kb on + strand, within PFLU_RS01290 at 288.509 kb on - strand, within PFLU_RS01290 at 288.509 kb on - strand, within PFLU_RS01290 at 288.509 kb on - strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.610 kb on + strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.611 kb on - strand, within PFLU_RS01290 at 288.623 kb on + strand, within PFLU_RS01290 at 288.623 kb on + strand, within PFLU_RS01290 at 288.623 kb on + strand, within PFLU_RS01290 at 288.623 kb on + strand, within PFLU_RS01290 at 288.623 kb on + strand, within PFLU_RS01290 at 288.623 kb on + strand, within PFLU_RS01290 at 288.624 kb on - strand, within PFLU_RS01290 at 288.624 kb on - strand, within PFLU_RS01290 at 288.624 kb on - strand, within PFLU_RS01290 at 288.685 kb on + strand at 288.685 kb on + strand at 288.686 kb on - strand at 288.686 kb on - strand at 288.686 kb on - strand at 288.742 kb on + strand at 288.742 kb on + strand at 288.743 kb on - strand at 288.743 kb on - strand at 288.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs remove 285,470 + +2.1 285,470 + -0.2 285,471 - -2.4 285,471 - +0.4 285,471 - -0.3 285,492 + +1.6 285,527 + +0.7 285,527 + +0.7 285,527 + +0.2 285,527 + +0.9 285,527 + -2.6 285,527 + -0.1 285,527 + -0.5 285,527 + -1.1 285,527 + -0.2 285,527 + -1.2 285,527 + +0.2 285,527 + -0.3 285,528 - -0.7 285,528 - -0.3 285,528 - -1.3 285,528 - +2.1 285,528 - -0.6 285,528 - -1.3 285,528 - -0.3 285,528 - +1.1 285,528 - +0.1 285,528 - -0.6 285,528 - -1.1 285,528 - +0.0 285,528 - +0.2 285,529 + -0.1 285,530 - +0.5 285,539 + -1.8 285,539 + -1.2 285,539 + -1.7 285,539 + -1.1 285,539 + -0.5 285,540 - -3.0 285,540 - +0.6 285,546 + -1.0 285,546 + +0.1 285,547 - +0.1 285,561 + -0.2 285,561 + +0.1 285,561 + +0.2 285,562 - -0.6 285,562 - -2.2 286,304 + +0.1 286,304 + -0.1 286,304 + +0.0 286,304 + -1.3 286,304 + -1.4 286,417 + -1.7 286,417 + -2.2 286,417 + +0.5 286,417 + -1.1 286,417 + -0.2 286,418 - -0.8 286,418 - -0.2 286,418 - -0.9 286,418 - -1.2 286,418 - -0.4 286,418 - +0.6 286,418 - -0.7 286,418 - +0.1 286,418 - -1.5 286,418 - +1.0 286,418 - +0.1 286,418 - -0.0 286,418 - -2.5 286,418 - +0.5 286,421 + -0.8 286,421 + +1.1 286,421 + +0.2 286,421 + -0.7 286,421 + -0.7 286,421 + +0.8 286,421 + -0.5 286,421 + -0.6 286,421 + -1.4 286,421 + +2.0 286,421 + -0.2 286,421 + +0.5 286,421 + +0.3 286,421 + -0.4 286,421 + +0.8 286,421 + -0.2 286,421 + -0.4 286,422 - -0.3 286,422 - -1.5 286,422 - -1.6 286,422 - +0.6 286,422 - -0.1 286,422 - -0.5 286,422 - +0.4 286,422 - -1.3 286,422 - +0.0 286,422 - -0.6 286,422 - +0.3 286,422 - +0.8 286,422 - +1.5 286,422 - -1.5 286,433 - -1.6 286,433 - +0.1 286,876 - PFLU_RS01285 0.34 -0.8 286,876 - PFLU_RS01285 0.34 +0.5 286,876 - PFLU_RS01285 0.34 +0.5 286,876 - PFLU_RS01285 0.34 -0.1 286,876 - PFLU_RS01285 0.34 -1.0 287,280 + PFLU_RS01285 0.64 +0.5 287,731 + -1.5 287,732 - -0.0 287,744 + -0.5 287,744 + +0.5 287,744 + -1.3 287,744 + +0.6 287,745 - -2.1 287,745 - -0.6 287,745 - -0.3 287,766 - -0.5 287,814 + +0.3 287,814 + +0.5 287,815 - +1.0 287,815 - -0.7 287,843 + +0.4 287,843 + +1.0 287,844 - -0.4 288,048 + PFLU_RS01290 0.25 +0.3 288,049 - PFLU_RS01290 0.26 -0.1 288,187 + PFLU_RS01290 0.41 -0.3 288,187 + PFLU_RS01290 0.41 +0.6 288,187 + PFLU_RS01290 0.41 +0.3 288,187 + PFLU_RS01290 0.41 +1.3 288,187 + PFLU_RS01290 0.41 -1.3 288,187 + PFLU_RS01290 0.41 -1.4 288,187 + PFLU_RS01290 0.41 -0.5 288,187 + PFLU_RS01290 0.41 +0.2 288,187 + PFLU_RS01290 0.41 -0.3 288,187 + PFLU_RS01290 0.41 -0.4 288,187 + PFLU_RS01290 0.41 +0.4 288,188 - PFLU_RS01290 0.41 -0.1 288,188 - PFLU_RS01290 0.41 +1.0 288,188 - PFLU_RS01290 0.41 -1.4 288,188 - PFLU_RS01290 0.41 +0.5 288,188 - PFLU_RS01290 0.41 +0.5 288,188 - PFLU_RS01290 0.41 +0.5 288,188 - PFLU_RS01290 0.41 -0.0 288,188 - PFLU_RS01290 0.41 -0.4 288,188 - PFLU_RS01290 0.41 -2.7 288,188 - PFLU_RS01290 0.41 +0.2 288,188 - PFLU_RS01290 0.41 -0.3 288,508 + PFLU_RS01290 0.76 -0.3 288,508 + PFLU_RS01290 0.76 -1.0 288,508 + PFLU_RS01290 0.76 -0.8 288,508 + PFLU_RS01290 0.76 +0.3 288,508 + PFLU_RS01290 0.76 +2.4 288,508 + PFLU_RS01290 0.76 -1.3 288,508 + PFLU_RS01290 0.76 -0.5 288,509 - PFLU_RS01290 0.76 -0.3 288,509 - PFLU_RS01290 0.76 -0.7 288,509 - PFLU_RS01290 0.76 +0.8 288,610 + PFLU_RS01290 0.88 +0.1 288,610 + PFLU_RS01290 0.88 +1.4 288,610 + PFLU_RS01290 0.88 +0.3 288,610 + PFLU_RS01290 0.88 +0.5 288,610 + PFLU_RS01290 0.88 +0.5 288,610 + PFLU_RS01290 0.88 -1.3 288,610 + PFLU_RS01290 0.88 +0.3 288,610 + PFLU_RS01290 0.88 +0.3 288,610 + PFLU_RS01290 0.88 -1.7 288,610 + PFLU_RS01290 0.88 -0.2 288,610 + PFLU_RS01290 0.88 +0.8 288,611 - PFLU_RS01290 0.88 +0.7 288,611 - PFLU_RS01290 0.88 -0.6 288,611 - PFLU_RS01290 0.88 +0.9 288,611 - PFLU_RS01290 0.88 -0.1 288,611 - PFLU_RS01290 0.88 +0.4 288,611 - PFLU_RS01290 0.88 -0.7 288,611 - PFLU_RS01290 0.88 +0.7 288,611 - PFLU_RS01290 0.88 +0.1 288,611 - PFLU_RS01290 0.88 -0.4 288,623 + PFLU_RS01290 0.89 -0.4 288,623 + PFLU_RS01290 0.89 +0.2 288,623 + PFLU_RS01290 0.89 -2.2 288,623 + PFLU_RS01290 0.89 -1.3 288,623 + PFLU_RS01290 0.89 -0.7 288,623 + PFLU_RS01290 0.89 +0.2 288,624 - PFLU_RS01290 0.89 +0.9 288,624 - PFLU_RS01290 0.89 +0.9 288,624 - PFLU_RS01290 0.89 +0.4 288,685 + -0.1 288,685 + +0.6 288,686 - -1.0 288,686 - +0.7 288,686 - +1.2 288,742 + +0.3 288,742 + +0.6 288,743 - +0.6 288,743 - -0.5 288,743 - +0.8
Or see this region's nucleotide sequence