Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0593

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0592 and DvMF_0593 are separated by 345 nucleotidesDvMF_0593 and DvMF_0594 are separated by 143 nucleotides DvMF_0592: DvMF_0592 - major facilitator superfamily MFS_1 (RefSeq), at 702,914 to 704,065 _0592 DvMF_0593: DvMF_0593 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 704,411 to 705,748 _0593 DvMF_0594: DvMF_0594 - intracellular protease, PfpI family (RefSeq), at 705,892 to 706,416 _0594 Position (kb) 704 705 706Strain fitness (log2 ratio) -2 -1 0 1at 703.541 kb on - strand, within DvMF_0592at 703.581 kb on + strand, within DvMF_0592at 703.629 kb on - strand, within DvMF_0592at 703.708 kb on + strand, within DvMF_0592at 703.842 kb on + strand, within DvMF_0592at 703.943 kb on - strand, within DvMF_0592at 703.955 kb on - strandat 703.972 kb on + strandat 703.980 kb on - strandat 703.991 kb on - strandat 704.610 kb on - strand, within DvMF_0593at 704.724 kb on + strand, within DvMF_0593at 705.709 kb on - strandat 706.015 kb on - strand, within DvMF_0594at 706.020 kb on - strand, within DvMF_0594at 706.293 kb on - strand, within DvMF_0594at 706.418 kb on + strandat 706.426 kb on - strandat 706.544 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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703,541 - DvMF_0592 0.54 -0.6
703,581 + DvMF_0592 0.58 -1.6
703,629 - DvMF_0592 0.62 -1.2
703,708 + DvMF_0592 0.69 -2.0
703,842 + DvMF_0592 0.81 -2.2
703,943 - DvMF_0592 0.89 -1.0
703,955 - -1.5
703,972 + -0.4
703,980 - -0.4
703,991 - -2.6
704,610 - DvMF_0593 0.15 -1.1
704,724 + DvMF_0593 0.23 -2.4
705,709 - -2.1
706,015 - DvMF_0594 0.23 -0.5
706,020 - DvMF_0594 0.24 +0.1
706,293 - DvMF_0594 0.76 -0.4
706,418 + -1.0
706,426 - -0.4
706,544 + -1.4

Or see this region's nucleotide sequence