Strain Fitness in Shewanella amazonensis SB2B around Sama_0816

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
999,700	-		Sama_0814	0.85	+0.1
999,700	-		Sama_0814	0.85	-3.0
999,713	+		Sama_0814	0.86	+2.3
999,714	-		Sama_0814	0.86	-0.9
999,812	+				-0.7
999,812	+				+0.2
999,813	-				+0.7
1,000,070	-		Sama_0815	0.23	+1.5
1,000,083	+		Sama_0815	0.24	+0.7
1,000,096	-		Sama_0815	0.26	+1.7
1,000,102	+		Sama_0815	0.27	+0.5
1,000,102	+		Sama_0815	0.27	+1.1
1,000,102	+		Sama_0815	0.27	-0.9
1,000,103	-		Sama_0815	0.27	+1.8
1,000,195	-		Sama_0815	0.38	-1.9
1,000,238	-		Sama_0815	0.44	-2.1
1,000,238	-		Sama_0815	0.44	+0.8
1,000,238	-		Sama_0815	0.44	-0.1
1,000,288	+		Sama_0815	0.50	-1.5
1,000,288	+		Sama_0815	0.50	+1.7
1,000,288	+		Sama_0815	0.50	+1.6
1,000,289	-		Sama_0815	0.50	-1.7
1,000,309	-		Sama_0815	0.53	-0.5
1,000,309	-		Sama_0815	0.53	-0.5
1,000,309	-		Sama_0815	0.53	+2.0
1,000,336	+		Sama_0815	0.56	+0.3
1,000,336	+		Sama_0815	0.56	-0.9
1,000,336	+		Sama_0815	0.56	-3.0
1,000,336	+		Sama_0815	0.56	-2.1
1,000,337	-		Sama_0815	0.56	-2.7
1,000,337	-		Sama_0815	0.56	-1.3
1,000,337	-		Sama_0815	0.56	-0.5
1,000,410	+		Sama_0815	0.66	-0.9
1,000,410	+		Sama_0815	0.66	-2.1
1,000,410	+		Sama_0815	0.66	-0.7
1,000,410	+		Sama_0815	0.66	+3.7
1,000,411	-		Sama_0815	0.66	-0.0
1,000,411	-		Sama_0815	0.66	-2.4
1,000,411	-		Sama_0815	0.66	+1.7
1,000,411	-		Sama_0815	0.66	+3.2
1,000,411	-		Sama_0815	0.66	-1.5
1,000,452	+		Sama_0815	0.71	-0.9
1,000,595	-		Sama_0815	0.89	+1.0
1,000,595	-		Sama_0815	0.89	+1.1
1,000,596	+		Sama_0815	0.89	-0.9
1,000,604	-				-1.0
1,000,682	-				-1.3
1,000,694	+				+1.1
1,000,694	+				+1.4
1,000,709	+				-1.7
1,000,710	-				-1.3
1,000,748	+				-1.1
1,000,780	-				+1.1
1,001,033	+		Sama_0816	0.28	-0.4
1,001,033	+		Sama_0816	0.28	-0.9
1,001,033	+		Sama_0816	0.28	-0.6
1,001,034	-		Sama_0816	0.28	-0.3
1,001,034	-		Sama_0816	0.28	+1.2
1,001,034	-		Sama_0816	0.28	-2.1
1,001,042	+		Sama_0816	0.29	+2.2
1,001,042	+		Sama_0816	0.29	-1.9
1,001,043	-		Sama_0816	0.29	-0.3
1,001,043	-		Sama_0816	0.29	+0.6
1,001,043	-		Sama_0816	0.29	-0.4
1,001,087	+		Sama_0816	0.33	+0.1
1,001,087	+		Sama_0816	0.33	+0.5
1,001,087	+		Sama_0816	0.33	+0.3
1,001,088	-		Sama_0816	0.33	-0.9
1,001,088	-		Sama_0816	0.33	-0.3
1,001,091	-		Sama_0816	0.33	-0.9
1,001,104	-		Sama_0816	0.34	-2.8
1,001,104	-		Sama_0816	0.34	+1.1
1,001,124	+		Sama_0816	0.36	-2.7
1,001,125	-		Sama_0816	0.36	+0.1
1,001,154	+		Sama_0816	0.38	+1.2
1,001,154	+		Sama_0816	0.38	-1.8
1,001,154	+		Sama_0816	0.38	-0.9
1,001,154	+		Sama_0816	0.38	-0.9
1,001,155	-		Sama_0816	0.38	+1.4
1,001,155	-		Sama_0816	0.38	-0.6
1,001,155	-		Sama_0816	0.38	+0.8
1,001,155	-		Sama_0816	0.38	+0.5
1,001,198	-		Sama_0816	0.42	+0.5
1,001,269	+		Sama_0816	0.47	-3.5
1,001,269	+		Sama_0816	0.47	-0.5
1,001,269	+		Sama_0816	0.47	+1.1
1,001,270	-		Sama_0816	0.47	-0.2
1,001,270	-		Sama_0816	0.47	-1.1
1,001,270	-		Sama_0816	0.47	-0.9
1,001,273	+		Sama_0816	0.48	+1.8
1,001,298	+		Sama_0816	0.50	-2.1
1,001,298	+		Sama_0816	0.50	+1.4
1,001,298	+		Sama_0816	0.50	+1.9
1,001,299	-		Sama_0816	0.50	-0.5
1,001,299	-		Sama_0816	0.50	+0.6
1,001,361	+		Sama_0816	0.55	-0.1
1,001,361	+		Sama_0816	0.55	+0.9
1,001,361	+		Sama_0816	0.55	+3.7
1,001,361	+		Sama_0816	0.55	-0.2
1,001,362	-		Sama_0816	0.55	-0.9
1,001,362	-		Sama_0816	0.55	+2.3
1,001,362	-		Sama_0816	0.55	+0.9
1,001,424	+		Sama_0816	0.60	+1.5
1,001,424	+		Sama_0816	0.60	+2.1
1,001,424	+		Sama_0816	0.60	+0.6
1,001,425	-		Sama_0816	0.60	-1.9
1,001,425	-		Sama_0816	0.60	-2.6
1,001,441	+		Sama_0816	0.61	-2.4
1,001,441	+		Sama_0816	0.61	+2.1
1,001,442	-		Sama_0816	0.61	+0.1
1,001,442	-		Sama_0816	0.61	+0.0
1,001,442	-		Sama_0816	0.61	+1.5
1,001,445	+		Sama_0816	0.62	+2.4
1,001,446	-		Sama_0816	0.62	-0.5
1,001,446	-		Sama_0816	0.62	-1.3
1,001,446	-		Sama_0816	0.62	+2.5
1,001,446	-		Sama_0816	0.62	+1.4
1,001,446	-		Sama_0816	0.62	-0.9
1,001,446	-		Sama_0816	0.62	+1.5
1,001,493	+		Sama_0816	0.66	+0.2
1,001,493	+		Sama_0816	0.66	+1.0
1,001,494	-		Sama_0816	0.66	+0.8
1,001,545	+		Sama_0816	0.70	-1.8
1,001,545	+		Sama_0816	0.70	-1.1
1,001,546	-		Sama_0816	0.70	+2.9
1,001,546	-		Sama_0816	0.70	-2.8
1,001,546	-		Sama_0816	0.70	+2.1
1,001,546	-		Sama_0816	0.70	+0.5
1,001,546	-		Sama_0816	0.70	+1.1
1,001,567	+		Sama_0816	0.72	-1.1
1,001,567	+		Sama_0816	0.72	+0.7
1,001,567	+		Sama_0816	0.72	-2.8
1,001,567	+		Sama_0816	0.72	-0.9
1,001,568	-		Sama_0816	0.72	+1.5
1,001,568	-		Sama_0816	0.72	+1.0
1,001,568	-		Sama_0816	0.72	-0.8
1,001,568	-		Sama_0816	0.72	-1.3
1,001,583	+		Sama_0816	0.73	+3.1
1,001,583	+		Sama_0816	0.73	+0.7
1,001,583	+		Sama_0816	0.73	+0.1
1,001,584	-		Sama_0816	0.73	-1.6
1,001,592	+		Sama_0816	0.74	+1.3
1,001,622	+		Sama_0816	0.76	+2.3
1,001,622	+		Sama_0816	0.76	-0.0
1,001,622	+		Sama_0816	0.76	+0.8
1,001,623	-		Sama_0816	0.76	+0.6
1,001,626	+		Sama_0816	0.76	+0.1
1,001,626	+		Sama_0816	0.76	+2.4
1,001,626	+		Sama_0816	0.76	-1.0
1,001,684	+		Sama_0816	0.81	+0.1
1,001,714	+		Sama_0816	0.84	-2.3
1,001,727	+		Sama_0816	0.85	-0.7
1,001,728	-		Sama_0816	0.85	-1.3
1,001,728	-		Sama_0816	0.85	-1.3
1,001,829	+				-0.3
1,001,839	-				-0.5
1,001,913	+				-0.2
1,001,914	-				+0.3
1,001,914	-				+2.5
1,001,914	-				+0.8
1,001,931	+				+1.4
1,001,931	+				-1.7
1,001,931	+				-1.3
1,001,932	-				-0.1
1,001,971	+				+3.7
1,001,971	+				-0.0
1,001,971	+				-0.9
1,001,971	+				-2.4
1,001,971	+				-0.3
1,001,971	+				-0.5
1,001,971	+				-0.2
1,001,972	-				-0.3
1,001,972	-				-0.8
1,002,035	+		Sama_0817	0.20	+2.7
1,002,056	+		Sama_0817	0.24	-1.5
1,002,057	-		Sama_0817	0.25	+3.4
1,002,057	-		Sama_0817	0.25	-1.3
1,002,133	+		Sama_0817	0.39	+0.5
1,002,133	+		Sama_0817	0.39	-1.3
1,002,133	+		Sama_0817	0.39	-2.3
1,002,134	-		Sama_0817	0.40	+0.1
1,002,134	-		Sama_0817	0.40	-0.9
1,002,134	-		Sama_0817	0.40	+1.0
1,002,134	-		Sama_0817	0.40	+0.5
1,002,134	-		Sama_0817	0.40	+0.6
1,002,134	-		Sama_0817	0.40	+1.1
1,002,134	-		Sama_0817	0.40	-0.0
1,002,134	-		Sama_0817	0.40	-1.7
1,002,145	+		Sama_0817	0.42	-2.5
1,002,145	+		Sama_0817	0.42	-0.4
1,002,145	+		Sama_0817	0.42	+1.7
1,002,145	+		Sama_0817	0.42	+1.2
1,002,145	+		Sama_0817	0.42	-0.6
1,002,145	+		Sama_0817	0.42	-1.3
1,002,145	+		Sama_0817	0.42	+2.8
1,002,146	-		Sama_0817	0.42	+0.1
1,002,146	-		Sama_0817	0.42	+0.4
1,002,146	-		Sama_0817	0.42	-1.4
1,002,174	+		Sama_0817	0.47	+0.7
1,002,174	+		Sama_0817	0.47	+1.7
1,002,174	+		Sama_0817	0.47	-0.8
1,002,174	+		Sama_0817	0.47	-2.1
1,002,174	+		Sama_0817	0.47	-1.5
1,002,174	+		Sama_0817	0.47	+0.6
1,002,174	+		Sama_0817	0.47	-1.3
1,002,175	-		Sama_0817	0.48	-1.3
1,002,175	-		Sama_0817	0.48	+0.7
1,002,175	-		Sama_0817	0.48	+0.5
1,002,175	-		Sama_0817	0.48	-3.3
1,002,175	-		Sama_0817	0.48	-3.5
1,002,255	-		Sama_0817	0.63	-0.5
1,002,258	+		Sama_0817	0.64	+0.7
1,002,259	-		Sama_0817	0.64	-1.9
1,002,286	+		Sama_0817	0.69	+2.8
1,002,286	+		Sama_0817	0.69	+1.4
1,002,286	+		Sama_0817	0.69	-0.3
1,002,286	+		Sama_0817	0.69	-2.3
1,002,286	+		Sama_0817	0.69	+1.5
1,002,286	+		Sama_0817	0.69	+1.9
1,002,287	-		Sama_0817	0.70	-1.2
1,002,287	-		Sama_0817	0.70	-0.5
1,002,287	-		Sama_0817	0.70	+1.7
1,002,287	-		Sama_0817	0.70	-0.4
1,002,287	-		Sama_0817	0.70	-0.1
1,002,287	-		Sama_0817	0.70	+0.4
1,002,287	-		Sama_0817	0.70	-0.3
1,002,375	+		Sama_0817	0.87	-0.3
1,002,375	+		Sama_0817	0.87	+1.2
1,002,376	-		Sama_0817	0.87	+0.6
1,002,425	-				+1.3
1,002,425	-				-0.8
1,002,425	-				+1.1
1,002,428	+				-3.0
1,002,428	+				-3.5
1,002,428	+				+0.1
1,002,428	+				+1.6
1,002,428	+				-0.9
1,002,428	+				-1.5
1,002,428	+				+0.3
1,002,428	+				-0.7
1,002,428	+				-0.1
1,002,428	+				+3.0
1,002,428	+				-0.5
1,002,429	-				+1.1
1,002,429	-				+2.7
1,002,429	-				+1.8
1,002,429	-				+0.4
1,002,429	-				-1.3
1,002,439	+				+1.6
1,002,440	-				-2.0
1,002,482	-				+2.1
1,002,482	-				-0.7
1,002,482	-				-3.5
1,002,594	+		Sama_0818	0.29	-0.1
1,002,594	+		Sama_0818	0.29	-0.2
1,002,595	-		Sama_0818	0.30	-0.5
1,002,611	+		Sama_0818	0.32	-4.2
1,002,612	-		Sama_0818	0.33	+1.1
1,002,627	+		Sama_0818	0.35	-0.1
1,002,627	+		Sama_0818	0.35	-2.4
1,002,628	-		Sama_0818	0.36	-2.5