Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06430

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06410 and PGA1_c06420 are separated by 207 nucleotidesPGA1_c06420 and PGA1_c06430 are separated by 96 nucleotidesPGA1_c06430 and PGA1_c06440 are separated by 121 nucleotidesPGA1_c06440 and PGA1_c06450 are separated by 13 nucleotides PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211 _c06410 PGA1_c06420: PGA1_c06420 - acetyltransferase domain-containing protein, at 657,419 to 657,928 _c06420 PGA1_c06430: PGA1_c06430 - hypothetical protein, at 658,025 to 658,804 _c06430 PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456 _c06440 PGA1_c06450: PGA1_c06450 - short-chain dehydrogenases/reductase domain-containing protein, at 659,470 to 660,111 _c06450 Position (kb) 658 659Strain fitness (log2 ratio) -2 -1 0 1 2at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.058 kb on + strand, within PGA1_c06410at 657.066 kb on - strand, within PGA1_c06410at 657.066 kb on - strand, within PGA1_c06410at 657.193 kb on + strandat 657.201 kb on - strandat 657.273 kb on - strandat 657.299 kb on - strandat 657.299 kb on - strandat 657.301 kb on + strandat 657.309 kb on - strandat 657.309 kb on - strandat 657.372 kb on + strandat 657.411 kb on + strandat 657.441 kb on + strandat 657.468 kb on - strandat 657.521 kb on - strand, within PGA1_c06420at 657.557 kb on - strand, within PGA1_c06420at 657.641 kb on - strand, within PGA1_c06420at 657.641 kb on - strand, within PGA1_c06420at 657.646 kb on - strand, within PGA1_c06420at 657.712 kb on - strand, within PGA1_c06420at 657.714 kb on + strand, within PGA1_c06420at 657.815 kb on - strand, within PGA1_c06420at 657.857 kb on - strand, within PGA1_c06420at 657.862 kb on + strand, within PGA1_c06420at 657.876 kb on - strand, within PGA1_c06420at 657.896 kb on - strandat 657.898 kb on + strandat 658.052 kb on + strandat 658.052 kb on + strandat 658.057 kb on + strandat 658.060 kb on - strandat 658.065 kb on - strandat 658.065 kb on - strandat 658.065 kb on - strandat 658.229 kb on - strand, within PGA1_c06430at 658.459 kb on + strand, within PGA1_c06430at 658.467 kb on + strand, within PGA1_c06430at 658.475 kb on - strand, within PGA1_c06430at 658.549 kb on + strand, within PGA1_c06430at 658.562 kb on + strand, within PGA1_c06430at 658.570 kb on - strand, within PGA1_c06430at 658.599 kb on + strand, within PGA1_c06430at 658.654 kb on + strand, within PGA1_c06430at 658.721 kb on - strand, within PGA1_c06430at 658.721 kb on - strand, within PGA1_c06430at 658.786 kb on - strandat 658.825 kb on - strandat 658.835 kb on + strandat 658.840 kb on + strandat 658.876 kb on + strandat 658.884 kb on - strandat 658.907 kb on + strandat 658.907 kb on + strandat 658.915 kb on + strandat 658.915 kb on + strandat 659.027 kb on - strand, within PGA1_c06440at 659.103 kb on - strand, within PGA1_c06440at 659.239 kb on + strand, within PGA1_c06440at 659.259 kb on + strand, within PGA1_c06440at 659.273 kb on + strand, within PGA1_c06440at 659.274 kb on + strand, within PGA1_c06440at 659.284 kb on + strand, within PGA1_c06440at 659.312 kb on - strand, within PGA1_c06440at 659.369 kb on + strand, within PGA1_c06440at 659.384 kb on + strand, within PGA1_c06440at 659.415 kb on + strandat 659.420 kb on + strandat 659.437 kb on - strandat 659.534 kb on - strandat 659.550 kb on + strand, within PGA1_c06450at 659.566 kb on - strand, within PGA1_c06450at 659.581 kb on - strand, within PGA1_c06450at 659.639 kb on - strand, within PGA1_c06450at 659.711 kb on - strand, within PGA1_c06450at 659.713 kb on + strand, within PGA1_c06450at 659.713 kb on + strand, within PGA1_c06450at 659.721 kb on - strand, within PGA1_c06450at 659.721 kb on - strand, within PGA1_c06450at 659.726 kb on - strand, within PGA1_c06450at 659.726 kb on - strand, within PGA1_c06450at 659.730 kb on + strand, within PGA1_c06450at 659.795 kb on - strand, within PGA1_c06450at 659.798 kb on + strand, within PGA1_c06450

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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657,058 + PGA1_c06410 0.75 -0.2
657,058 + PGA1_c06410 0.75 -0.1
657,058 + PGA1_c06410 0.75 +0.0
657,058 + PGA1_c06410 0.75 -0.2
657,058 + PGA1_c06410 0.75 -0.3
657,066 - PGA1_c06410 0.76 -1.4
657,066 - PGA1_c06410 0.76 -0.0
657,193 + -0.1
657,201 - +0.1
657,273 - -0.2
657,299 - -0.3
657,299 - -0.9
657,301 + +0.6
657,309 - -0.2
657,309 - +0.7
657,372 + -1.8
657,411 + +0.1
657,441 + +0.9
657,468 - +1.5
657,521 - PGA1_c06420 0.20 +1.0
657,557 - PGA1_c06420 0.27 +1.2
657,641 - PGA1_c06420 0.44 +0.8
657,641 - PGA1_c06420 0.44 +0.2
657,646 - PGA1_c06420 0.45 -1.6
657,712 - PGA1_c06420 0.57 +1.8
657,714 + PGA1_c06420 0.58 +1.5
657,815 - PGA1_c06420 0.78 +0.6
657,857 - PGA1_c06420 0.86 +1.6
657,862 + PGA1_c06420 0.87 +0.1
657,876 - PGA1_c06420 0.90 -0.0
657,896 - +0.7
657,898 + +0.7
658,052 + -1.7
658,052 + -1.0
658,057 + -0.0
658,060 - -0.4
658,065 - -0.5
658,065 - -0.5
658,065 - -0.1
658,229 - PGA1_c06430 0.26 -0.3
658,459 + PGA1_c06430 0.56 -0.7
658,467 + PGA1_c06430 0.57 -1.4
658,475 - PGA1_c06430 0.58 +0.2
658,549 + PGA1_c06430 0.67 -0.2
658,562 + PGA1_c06430 0.69 -0.5
658,570 - PGA1_c06430 0.70 -0.4
658,599 + PGA1_c06430 0.74 -1.1
658,654 + PGA1_c06430 0.81 -0.3
658,721 - PGA1_c06430 0.89 +0.0
658,721 - PGA1_c06430 0.89 -0.2
658,786 - +0.3
658,825 - +0.4
658,835 + -1.5
658,840 + +0.5
658,876 + +0.2
658,884 - +0.7
658,907 + +0.7
658,907 + -0.2
658,915 + +0.1
658,915 + +0.5
659,027 - PGA1_c06440 0.19 -0.0
659,103 - PGA1_c06440 0.33 -1.2
659,239 + PGA1_c06440 0.59 -0.1
659,259 + PGA1_c06440 0.63 -0.6
659,273 + PGA1_c06440 0.65 +0.2
659,274 + PGA1_c06440 0.66 -0.1
659,284 + PGA1_c06440 0.67 -0.9
659,312 - PGA1_c06440 0.73 +0.4
659,369 + PGA1_c06440 0.83 +0.3
659,384 + PGA1_c06440 0.86 -0.5
659,415 + +0.2
659,420 + -0.9
659,437 - -0.1
659,534 - +0.4
659,550 + PGA1_c06450 0.12 -0.7
659,566 - PGA1_c06450 0.15 -0.7
659,581 - PGA1_c06450 0.17 -0.7
659,639 - PGA1_c06450 0.26 -0.1
659,711 - PGA1_c06450 0.38 -0.1
659,713 + PGA1_c06450 0.38 -0.3
659,713 + PGA1_c06450 0.38 -0.8
659,721 - PGA1_c06450 0.39 -0.1
659,721 - PGA1_c06450 0.39 -0.3
659,726 - PGA1_c06450 0.40 +0.7
659,726 - PGA1_c06450 0.40 +0.5
659,730 + PGA1_c06450 0.40 +0.1
659,795 - PGA1_c06450 0.51 +0.2
659,798 + PGA1_c06450 0.51 -0.9

Or see this region's nucleotide sequence