Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2948

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2946 and DvMF_2947 are separated by 21 nucleotidesDvMF_2947 and DvMF_2948 are separated by 227 nucleotidesDvMF_2948 and DvMF_2949 are separated by 176 nucleotides DvMF_2946: DvMF_2946 - hypothetical protein (RefSeq), at 3,717,737 to 3,718,792 _2946 DvMF_2947: DvMF_2947 - Carboxymuconolactone decarboxylase (RefSeq), at 3,718,814 to 3,719,548 _2947 DvMF_2948: DvMF_2948 - transcriptional regulator, AraC family (RefSeq), at 3,719,776 to 3,720,675 _2948 DvMF_2949: DvMF_2949 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,720,852 to 3,721,754 _2949 Position (kb) 3719 3720 3721Strain fitness (log2 ratio) -1 0 1 2at 3718.970 kb on + strand, within DvMF_2947at 3718.978 kb on - strand, within DvMF_2947at 3718.994 kb on + strand, within DvMF_2947at 3719.049 kb on - strand, within DvMF_2947at 3719.113 kb on - strand, within DvMF_2947at 3719.125 kb on - strand, within DvMF_2947at 3719.126 kb on - strand, within DvMF_2947at 3719.187 kb on + strand, within DvMF_2947at 3719.250 kb on - strand, within DvMF_2947at 3719.670 kb on + strandat 3719.957 kb on + strand, within DvMF_2948at 3720.128 kb on + strand, within DvMF_2948at 3721.083 kb on + strand, within DvMF_2949at 3721.161 kb on + strand, within DvMF_2949at 3721.408 kb on + strand, within DvMF_2949

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,718,970 + DvMF_2947 0.21 +0.0
3,718,978 - DvMF_2947 0.22 -0.4
3,718,994 + DvMF_2947 0.24 -0.2
3,719,049 - DvMF_2947 0.32 -1.3
3,719,113 - DvMF_2947 0.41 +0.2
3,719,125 - DvMF_2947 0.42 -0.1
3,719,126 - DvMF_2947 0.42 +2.1
3,719,187 + DvMF_2947 0.51 -0.6
3,719,250 - DvMF_2947 0.59 -0.6
3,719,670 + -0.3
3,719,957 + DvMF_2948 0.20 +1.1
3,720,128 + DvMF_2948 0.39 -0.4
3,721,083 + DvMF_2949 0.26 -0.9
3,721,161 + DvMF_2949 0.34 -0.3
3,721,408 + DvMF_2949 0.62 -1.3

Or see this region's nucleotide sequence