Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2946 and DvMF_2947 are separated by 21 nucleotides DvMF_2947 and DvMF_2948 are separated by 227 nucleotides DvMF_2948 and DvMF_2949 are separated by 176 nucleotides
DvMF_2946: DvMF_2946 - hypothetical protein (RefSeq), at 3,717,737 to 3,718,792
_2946
DvMF_2947: DvMF_2947 - Carboxymuconolactone decarboxylase (RefSeq), at 3,718,814 to 3,719,548
_2947
DvMF_2948: DvMF_2948 - transcriptional regulator, AraC family (RefSeq), at 3,719,776 to 3,720,675
_2948
DvMF_2949: DvMF_2949 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,720,852 to 3,721,754
_2949
Position (kb)
3719
3720
3721 Strain fitness (log2 ratio)
-1
0
1
2 at 3718.970 kb on + strand, within DvMF_2947 at 3718.978 kb on - strand, within DvMF_2947 at 3718.994 kb on + strand, within DvMF_2947 at 3719.049 kb on - strand, within DvMF_2947 at 3719.113 kb on - strand, within DvMF_2947 at 3719.125 kb on - strand, within DvMF_2947 at 3719.126 kb on - strand, within DvMF_2947 at 3719.187 kb on + strand, within DvMF_2947 at 3719.250 kb on - strand, within DvMF_2947 at 3719.670 kb on + strand at 3719.957 kb on + strand, within DvMF_2948 at 3720.128 kb on + strand, within DvMF_2948 at 3721.083 kb on + strand, within DvMF_2949 at 3721.161 kb on + strand, within DvMF_2949 at 3721.408 kb on + strand, within DvMF_2949
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 3,718,970 + DvMF_2947 0.21 +0.0 3,718,978 - DvMF_2947 0.22 -0.4 3,718,994 + DvMF_2947 0.24 -0.2 3,719,049 - DvMF_2947 0.32 -1.3 3,719,113 - DvMF_2947 0.41 +0.2 3,719,125 - DvMF_2947 0.42 -0.1 3,719,126 - DvMF_2947 0.42 +2.1 3,719,187 + DvMF_2947 0.51 -0.6 3,719,250 - DvMF_2947 0.59 -0.6 3,719,670 + -0.3 3,719,957 + DvMF_2948 0.20 +1.1 3,720,128 + DvMF_2948 0.39 -0.4 3,721,083 + DvMF_2949 0.26 -0.9 3,721,161 + DvMF_2949 0.34 -0.3 3,721,408 + DvMF_2949 0.62 -1.3
Or see this region's nucleotide sequence