Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2288

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2287 and DvMF_2288 overlap by 32 nucleotidesDvMF_2288 and DvMF_2289 overlap by 14 nucleotidesDvMF_2289 and DvMF_2290 are separated by 61 nucleotides DvMF_2287: DvMF_2287 - flagellar M-ring protein FliF (RefSeq), at 2,874,551 to 2,876,170 _2287 DvMF_2288: DvMF_2288 - flagellar motor switch protein FliG (RefSeq), at 2,876,139 to 2,877,155 _2288 DvMF_2289: DvMF_2289 - flagellar assembly protein FliH, putative (RefSeq), at 2,877,142 to 2,877,906 _2289 DvMF_2290: DvMF_2290 - flagellar protein export ATPase FliI (RefSeq), at 2,877,968 to 2,879,374 _2290 Position (kb) 2876 2877 2878Strain fitness (log2 ratio) -1 0 1 2at 2875.170 kb on + strand, within DvMF_2287at 2875.194 kb on + strand, within DvMF_2287at 2875.206 kb on - strand, within DvMF_2287at 2875.295 kb on - strand, within DvMF_2287at 2875.362 kb on + strand, within DvMF_2287at 2875.438 kb on - strand, within DvMF_2287at 2875.673 kb on + strand, within DvMF_2287at 2875.729 kb on + strand, within DvMF_2287at 2875.815 kb on + strand, within DvMF_2287at 2875.843 kb on - strand, within DvMF_2287at 2875.870 kb on + strand, within DvMF_2287at 2875.914 kb on + strand, within DvMF_2287at 2875.936 kb on - strand, within DvMF_2287at 2876.047 kb on + strandat 2876.062 kb on + strandat 2876.124 kb on + strandat 2876.441 kb on - strand, within DvMF_2288at 2876.586 kb on + strand, within DvMF_2288at 2876.622 kb on - strand, within DvMF_2288at 2876.914 kb on - strand, within DvMF_2288at 2876.935 kb on + strand, within DvMF_2288at 2876.956 kb on + strand, within DvMF_2288at 2876.977 kb on - strand, within DvMF_2288at 2877.330 kb on + strand, within DvMF_2289at 2877.354 kb on - strand, within DvMF_2289at 2877.360 kb on - strand, within DvMF_2289at 2877.673 kb on - strand, within DvMF_2289at 2877.730 kb on + strand, within DvMF_2289at 2877.949 kb on - strandat 2877.964 kb on + strandat 2878.154 kb on + strand, within DvMF_2290

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,875,170 + DvMF_2287 0.38 +1.4
2,875,194 + DvMF_2287 0.40 +0.8
2,875,206 - DvMF_2287 0.40 +1.3
2,875,295 - DvMF_2287 0.46 +2.1
2,875,362 + DvMF_2287 0.50 +1.0
2,875,438 - DvMF_2287 0.55 +1.9
2,875,673 + DvMF_2287 0.69 +1.3
2,875,729 + DvMF_2287 0.73 +0.9
2,875,815 + DvMF_2287 0.78 +1.2
2,875,843 - DvMF_2287 0.80 +1.1
2,875,870 + DvMF_2287 0.81 +1.2
2,875,914 + DvMF_2287 0.84 +1.1
2,875,936 - DvMF_2287 0.85 +1.1
2,876,047 + +1.7
2,876,062 + +1.1
2,876,124 + -0.5
2,876,441 - DvMF_2288 0.30 +1.0
2,876,586 + DvMF_2288 0.44 +1.1
2,876,622 - DvMF_2288 0.47 +0.8
2,876,914 - DvMF_2288 0.76 +1.4
2,876,935 + DvMF_2288 0.78 +0.9
2,876,956 + DvMF_2288 0.80 +0.8
2,876,977 - DvMF_2288 0.82 +1.3
2,877,330 + DvMF_2289 0.25 +1.7
2,877,354 - DvMF_2289 0.28 +1.6
2,877,360 - DvMF_2289 0.28 +1.7
2,877,673 - DvMF_2289 0.69 +1.6
2,877,730 + DvMF_2289 0.77 +1.5
2,877,949 - +1.1
2,877,964 + +0.4
2,878,154 + DvMF_2290 0.13 +1.5

Or see this region's nucleotide sequence