Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2214

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2212 and DvMF_2213 are separated by 26 nucleotidesDvMF_2213 and DvMF_2214 are separated by 103 nucleotidesDvMF_2214 and fliP are separated by 139 nucleotides DvMF_2212: DvMF_2212 - flagellar basal body-associated protein FliL (RefSeq), at 2,765,999 to 2,766,514 _2212 DvMF_2213: DvMF_2213 - flagellar motor switch protein FliN (RefSeq), at 2,766,541 to 2,767,083 _2213 DvMF_2214: DvMF_2214 - flagellar biosynthesis protein FliO (RefSeq), at 2,767,187 to 2,767,762 _2214 DvMF_2215: fliP - flagellar biosynthesis protein FliP (RefSeq), at 2,767,902 to 2,768,783 fliP Position (kb) 2767 2768Strain fitness (log2 ratio) -1 0 1at 2766.468 kb on + strandat 2766.704 kb on + strand, within DvMF_2213at 2766.704 kb on + strand, within DvMF_2213at 2766.712 kb on - strand, within DvMF_2213at 2766.914 kb on - strand, within DvMF_2213at 2766.916 kb on + strand, within DvMF_2213at 2766.996 kb on + strand, within DvMF_2213at 2767.267 kb on - strand, within DvMF_2214at 2767.427 kb on - strand, within DvMF_2214at 2767.529 kb on - strand, within DvMF_2214at 2767.854 kb on + strandat 2768.096 kb on + strand, within fliPat 2768.133 kb on - strand, within fliPat 2768.133 kb on - strand, within fliPat 2768.136 kb on + strand, within fliPat 2768.299 kb on - strand, within fliPat 2768.315 kb on - strand, within fliPat 2768.466 kb on - strand, within fliPat 2768.575 kb on + strand, within fliP

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,766,468 + -0.3
2,766,704 + DvMF_2213 0.30 +0.6
2,766,704 + DvMF_2213 0.30 +1.1
2,766,712 - DvMF_2213 0.31 +0.9
2,766,914 - DvMF_2213 0.69 +0.1
2,766,916 + DvMF_2213 0.69 +0.7
2,766,996 + DvMF_2213 0.84 +0.6
2,767,267 - DvMF_2214 0.14 +0.2
2,767,427 - DvMF_2214 0.42 +0.6
2,767,529 - DvMF_2214 0.59 +0.7
2,767,854 + +0.9
2,768,096 + fliP DvMF_2215 0.22 +1.1
2,768,133 - fliP DvMF_2215 0.26 +1.0
2,768,133 - fliP DvMF_2215 0.26 +1.1
2,768,136 + fliP DvMF_2215 0.27 +1.1
2,768,299 - fliP DvMF_2215 0.45 +1.0
2,768,315 - fliP DvMF_2215 0.47 +1.0
2,768,466 - fliP DvMF_2215 0.64 +1.3
2,768,575 + fliP DvMF_2215 0.76 +1.1

Or see this region's nucleotide sequence