Experiment: KB with Physcion 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3974 and Psyr_3975 overlap by 4 nucleotides Psyr_3975 and Psyr_3976 are separated by 11 nucleotides Psyr_3976 and Psyr_3977 are separated by 109 nucleotides
Psyr_3974: Psyr_3974 - ABC transporter, at 4,721,850 to 4,722,632
_3974
Psyr_3975: Psyr_3975 - conserved hypothetical protein, at 4,722,629 to 4,723,354
_3975
Psyr_3976: Psyr_3976 - conserved hypothetical protein, at 4,723,366 to 4,723,983
_3976
Psyr_3977: Psyr_3977 - Urea amidolyase-related protein, at 4,724,093 to 4,728,559
_3977
Position (kb) 4723
4724 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4722.499 kb on + strand, within Psyr_3974 at 4722.500 kb on - strand, within Psyr_3974 at 4722.500 kb on - strand, within Psyr_3974 at 4722.546 kb on + strand, within Psyr_3974 at 4722.546 kb on + strand, within Psyr_3974 at 4722.706 kb on - strand, within Psyr_3975 at 4722.901 kb on + strand, within Psyr_3975 at 4722.902 kb on - strand, within Psyr_3975 at 4722.962 kb on + strand, within Psyr_3975 at 4722.963 kb on - strand, within Psyr_3975 at 4723.154 kb on + strand, within Psyr_3975 at 4723.154 kb on + strand, within Psyr_3975 at 4723.155 kb on - strand, within Psyr_3975 at 4723.166 kb on + strand, within Psyr_3975 at 4723.167 kb on - strand, within Psyr_3975 at 4723.167 kb on - strand, within Psyr_3975 at 4723.167 kb on - strand, within Psyr_3975 at 4723.232 kb on + strand, within Psyr_3975 at 4723.233 kb on - strand, within Psyr_3975 at 4723.564 kb on + strand, within Psyr_3976 at 4723.564 kb on + strand, within Psyr_3976 at 4723.564 kb on + strand, within Psyr_3976 at 4723.708 kb on + strand, within Psyr_3976 at 4723.709 kb on - strand, within Psyr_3976 at 4723.732 kb on + strand, within Psyr_3976 at 4723.732 kb on + strand, within Psyr_3976 at 4723.732 kb on + strand, within Psyr_3976 at 4723.732 kb on + strand, within Psyr_3976 at 4723.733 kb on - strand, within Psyr_3976 at 4723.733 kb on - strand, within Psyr_3976 at 4723.733 kb on - strand, within Psyr_3976 at 4723.733 kb on - strand, within Psyr_3976 at 4723.808 kb on + strand, within Psyr_3976 at 4723.867 kb on + strand, within Psyr_3976 at 4723.867 kb on + strand, within Psyr_3976 at 4723.868 kb on - strand, within Psyr_3976 at 4724.020 kb on + strand at 4724.021 kb on - strand at 4724.087 kb on + strand at 4724.186 kb on + strand at 4724.186 kb on + strand at 4724.186 kb on + strand at 4724.187 kb on - strand at 4724.270 kb on + strand at 4724.270 kb on + strand at 4724.270 kb on + strand at 4724.270 kb on + strand at 4724.271 kb on - strand at 4724.271 kb on - strand at 4724.271 kb on - strand at 4724.271 kb on - strand at 4724.271 kb on - strand at 4724.693 kb on + strand, within Psyr_3977 at 4724.693 kb on + strand, within Psyr_3977 at 4724.694 kb on - strand, within Psyr_3977 at 4724.694 kb on - strand, within Psyr_3977 at 4724.694 kb on - strand, within Psyr_3977 at 4724.945 kb on + strand, within Psyr_3977 at 4724.945 kb on + strand, within Psyr_3977 at 4724.946 kb on - strand, within Psyr_3977
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Physcion 10 mM remove 4,722,499 + Psyr_3974 0.83 +1.7 4,722,500 - Psyr_3974 0.83 -0.2 4,722,500 - Psyr_3974 0.83 +3.0 4,722,546 + Psyr_3974 0.89 +0.6 4,722,546 + Psyr_3974 0.89 -0.4 4,722,706 - Psyr_3975 0.11 +0.1 4,722,901 + Psyr_3975 0.37 -0.4 4,722,902 - Psyr_3975 0.38 +1.0 4,722,962 + Psyr_3975 0.46 +3.0 4,722,963 - Psyr_3975 0.46 +4.5 4,723,154 + Psyr_3975 0.72 -0.6 4,723,154 + Psyr_3975 0.72 +0.5 4,723,155 - Psyr_3975 0.72 -0.6 4,723,166 + Psyr_3975 0.74 -0.8 4,723,167 - Psyr_3975 0.74 +0.5 4,723,167 - Psyr_3975 0.74 +1.2 4,723,167 - Psyr_3975 0.74 +1.7 4,723,232 + Psyr_3975 0.83 +1.6 4,723,233 - Psyr_3975 0.83 +2.2 4,723,564 + Psyr_3976 0.32 -0.9 4,723,564 + Psyr_3976 0.32 +0.1 4,723,564 + Psyr_3976 0.32 +0.5 4,723,708 + Psyr_3976 0.55 +0.9 4,723,709 - Psyr_3976 0.56 +0.4 4,723,732 + Psyr_3976 0.59 +0.2 4,723,732 + Psyr_3976 0.59 +0.1 4,723,732 + Psyr_3976 0.59 -0.2 4,723,732 + Psyr_3976 0.59 +1.0 4,723,733 - Psyr_3976 0.59 +0.6 4,723,733 - Psyr_3976 0.59 -0.1 4,723,733 - Psyr_3976 0.59 -0.4 4,723,733 - Psyr_3976 0.59 -0.2 4,723,808 + Psyr_3976 0.72 -0.5 4,723,867 + Psyr_3976 0.81 +0.3 4,723,867 + Psyr_3976 0.81 +0.5 4,723,868 - Psyr_3976 0.81 -0.1 4,724,020 + +2.2 4,724,021 - +1.3 4,724,087 + -0.4 4,724,186 + -0.7 4,724,186 + -0.1 4,724,186 + -0.6 4,724,187 - +0.3 4,724,270 + +1.2 4,724,270 + -0.9 4,724,270 + +0.9 4,724,270 + +0.0 4,724,271 - +1.4 4,724,271 - -0.9 4,724,271 - +0.9 4,724,271 - +1.2 4,724,271 - -0.3 4,724,693 + Psyr_3977 0.13 -0.0 4,724,693 + Psyr_3977 0.13 +1.7 4,724,694 - Psyr_3977 0.13 +0.5 4,724,694 - Psyr_3977 0.13 +3.2 4,724,694 - Psyr_3977 0.13 +0.7 4,724,945 + Psyr_3977 0.19 +1.0 4,724,945 + Psyr_3977 0.19 -0.3 4,724,946 - Psyr_3977 0.19 -0.4
Or see this region's nucleotide sequence