Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5522

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5521 and Pf6N2E2_5522 are separated by 142 nucleotidesPf6N2E2_5522 and Pf6N2E2_5523 are separated by 152 nucleotides Pf6N2E2_5521 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 6,340,919 to 6,341,836 _5521 Pf6N2E2_5522 - FIG001943: hypothetical protein YajQ, at 6,341,979 to 6,342,464 _5522 Pf6N2E2_5523 - Small-conductance mechanosensitive channel, at 6,342,617 to 6,343,459 _5523 Position (kb) 6341 6342 6343Strain fitness (log2 ratio) -2 -1 0 1at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.037 kb on + strand, within Pf6N2E2_5521at 6341.038 kb on - strand, within Pf6N2E2_5521at 6341.038 kb on - strand, within Pf6N2E2_5521at 6341.076 kb on + strand, within Pf6N2E2_5521at 6341.076 kb on + strand, within Pf6N2E2_5521at 6341.088 kb on + strand, within Pf6N2E2_5521at 6341.088 kb on + strand, within Pf6N2E2_5521at 6341.088 kb on + strand, within Pf6N2E2_5521at 6341.132 kb on + strand, within Pf6N2E2_5521at 6341.400 kb on + strand, within Pf6N2E2_5521at 6341.417 kb on + strand, within Pf6N2E2_5521at 6341.536 kb on + strand, within Pf6N2E2_5521at 6341.536 kb on + strand, within Pf6N2E2_5521at 6341.536 kb on + strand, within Pf6N2E2_5521at 6341.536 kb on + strand, within Pf6N2E2_5521at 6341.536 kb on + strand, within Pf6N2E2_5521at 6341.537 kb on - strand, within Pf6N2E2_5521at 6341.537 kb on - strand, within Pf6N2E2_5521at 6341.537 kb on - strand, within Pf6N2E2_5521at 6341.537 kb on - strand, within Pf6N2E2_5521at 6341.537 kb on - strand, within Pf6N2E2_5521at 6341.595 kb on + strand, within Pf6N2E2_5521at 6341.612 kb on + strand, within Pf6N2E2_5521at 6341.845 kb on + strandat 6341.901 kb on + strandat 6341.901 kb on + strandat 6341.901 kb on + strandat 6341.903 kb on + strandat 6341.903 kb on + strandat 6341.903 kb on + strandat 6341.903 kb on + strandat 6341.903 kb on + strandat 6341.903 kb on + strandat 6341.903 kb on + strandat 6341.904 kb on - strandat 6341.904 kb on - strandat 6341.904 kb on - strandat 6341.904 kb on - strandat 6341.904 kb on - strandat 6341.904 kb on - strandat 6341.918 kb on + strandat 6341.946 kb on + strandat 6341.947 kb on - strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.976 kb on + strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.977 kb on - strandat 6341.999 kb on - strandat 6342.228 kb on + strand, within Pf6N2E2_5522at 6342.229 kb on - strand, within Pf6N2E2_5522at 6342.311 kb on + strand, within Pf6N2E2_5522at 6342.311 kb on + strand, within Pf6N2E2_5522at 6342.312 kb on - strand, within Pf6N2E2_5522at 6342.312 kb on - strand, within Pf6N2E2_5522at 6342.449 kb on + strandat 6342.465 kb on + strandat 6342.466 kb on - strandat 6342.466 kb on - strandat 6342.466 kb on - strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.523 kb on + strandat 6342.524 kb on - strandat 6342.524 kb on - strandat 6342.524 kb on - strandat 6342.524 kb on - strandat 6342.524 kb on - strandat 6342.524 kb on - strandat 6342.525 kb on + strandat 6342.525 kb on + strandat 6342.526 kb on - strandat 6342.526 kb on - strandat 6342.590 kb on + strandat 6342.606 kb on - strandat 6342.606 kb on - strandat 6342.686 kb on + strandat 6342.844 kb on - strand, within Pf6N2E2_5523at 6342.844 kb on - strand, within Pf6N2E2_5523at 6342.844 kb on - strand, within Pf6N2E2_5523at 6343.132 kb on + strand, within Pf6N2E2_5523at 6343.187 kb on + strand, within Pf6N2E2_5523at 6343.340 kb on + strand, within Pf6N2E2_5523at 6343.341 kb on - strand, within Pf6N2E2_5523at 6343.341 kb on - strand, within Pf6N2E2_5523at 6343.405 kb on + strandat 6343.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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6,341,037 + Pf6N2E2_5521 0.13 -0.4
6,341,037 + Pf6N2E2_5521 0.13 -0.4
6,341,037 + Pf6N2E2_5521 0.13 -0.1
6,341,037 + Pf6N2E2_5521 0.13 +0.4
6,341,037 + Pf6N2E2_5521 0.13 -0.1
6,341,037 + Pf6N2E2_5521 0.13 -0.1
6,341,037 + Pf6N2E2_5521 0.13 +0.4
6,341,038 - Pf6N2E2_5521 0.13 +0.7
6,341,038 - Pf6N2E2_5521 0.13 -0.5
6,341,076 + Pf6N2E2_5521 0.17 +0.6
6,341,076 + Pf6N2E2_5521 0.17 +0.6
6,341,088 + Pf6N2E2_5521 0.18 +0.3
6,341,088 + Pf6N2E2_5521 0.18 -0.1
6,341,088 + Pf6N2E2_5521 0.18 +0.1
6,341,132 + Pf6N2E2_5521 0.23 +0.2
6,341,400 + Pf6N2E2_5521 0.52 -0.5
6,341,417 + Pf6N2E2_5521 0.54 +0.6
6,341,536 + Pf6N2E2_5521 0.67 +0.4
6,341,536 + Pf6N2E2_5521 0.67 -0.4
6,341,536 + Pf6N2E2_5521 0.67 +0.7
6,341,536 + Pf6N2E2_5521 0.67 +1.6
6,341,536 + Pf6N2E2_5521 0.67 +0.4
6,341,537 - Pf6N2E2_5521 0.67 +0.8
6,341,537 - Pf6N2E2_5521 0.67 +0.7
6,341,537 - Pf6N2E2_5521 0.67 +0.4
6,341,537 - Pf6N2E2_5521 0.67 -0.2
6,341,537 - Pf6N2E2_5521 0.67 +0.9
6,341,595 + Pf6N2E2_5521 0.74 +0.4
6,341,612 + Pf6N2E2_5521 0.75 +0.7
6,341,845 + -0.4
6,341,901 + -0.7
6,341,901 + +0.0
6,341,901 + +0.7
6,341,903 + +1.2
6,341,903 + +0.6
6,341,903 + +0.1
6,341,903 + +0.8
6,341,903 + -1.7
6,341,903 + +0.0
6,341,903 + -0.5
6,341,904 - -0.4
6,341,904 - +0.2
6,341,904 - +0.6
6,341,904 - +1.6
6,341,904 - -0.4
6,341,904 - -0.4
6,341,918 + +0.8
6,341,946 + +1.0
6,341,947 - -1.3
6,341,976 + -0.6
6,341,976 + -0.1
6,341,976 + +0.1
6,341,976 + -0.7
6,341,976 + -0.4
6,341,976 + +0.1
6,341,976 + +0.1
6,341,976 + +0.4
6,341,976 + +0.1
6,341,977 - -0.6
6,341,977 - -0.6
6,341,977 - +1.1
6,341,977 - +0.4
6,341,977 - +1.0
6,341,977 - +0.8
6,341,977 - +0.4
6,341,977 - +0.2
6,341,977 - +0.7
6,341,977 - -0.4
6,341,977 - +1.4
6,341,977 - +0.2
6,341,977 - +0.3
6,341,999 - -0.1
6,342,228 + Pf6N2E2_5522 0.51 -0.2
6,342,229 - Pf6N2E2_5522 0.51 -2.1
6,342,311 + Pf6N2E2_5522 0.68 -0.1
6,342,311 + Pf6N2E2_5522 0.68 -0.4
6,342,312 - Pf6N2E2_5522 0.69 -0.8
6,342,312 - Pf6N2E2_5522 0.69 -1.9
6,342,449 + -0.4
6,342,465 + -0.7
6,342,466 - -0.4
6,342,466 - -0.0
6,342,466 - +0.6
6,342,523 + +0.0
6,342,523 + +0.6
6,342,523 + +0.1
6,342,523 + +0.9
6,342,523 + +0.1
6,342,523 + -0.1
6,342,523 + -0.2
6,342,523 + +0.5
6,342,523 + -2.0
6,342,523 + +0.5
6,342,523 + -0.1
6,342,523 + +1.3
6,342,523 + +1.3
6,342,523 + +0.7
6,342,523 + -1.4
6,342,523 + -0.9
6,342,523 + +1.4
6,342,523 + +0.5
6,342,523 + -0.1
6,342,523 + -0.2
6,342,524 - -1.1
6,342,524 - -0.2
6,342,524 - -1.3
6,342,524 - +0.7
6,342,524 - +0.4
6,342,524 - +0.2
6,342,525 + -1.0
6,342,525 + -0.7
6,342,526 - -0.8
6,342,526 - +0.1
6,342,590 + -0.1
6,342,606 - +0.3
6,342,606 - -0.2
6,342,686 + -0.0
6,342,844 - Pf6N2E2_5523 0.27 -0.2
6,342,844 - Pf6N2E2_5523 0.27 +0.6
6,342,844 - Pf6N2E2_5523 0.27 +0.7
6,343,132 + Pf6N2E2_5523 0.61 +0.5
6,343,187 + Pf6N2E2_5523 0.68 -0.4
6,343,340 + Pf6N2E2_5523 0.86 -0.5
6,343,341 - Pf6N2E2_5523 0.86 -0.7
6,343,341 - Pf6N2E2_5523 0.86 +0.2
6,343,405 + -0.6
6,343,457 + +0.3

Or see this region's nucleotide sequence