Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4066

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4064 and Pf6N2E2_4065 are separated by 161 nucleotidesPf6N2E2_4065 and Pf6N2E2_4066 are separated by 152 nucleotidesPf6N2E2_4066 and Pf6N2E2_4067 are separated by 44 nucleotides Pf6N2E2_4064 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 4,739,152 to 4,740,042 _4064 Pf6N2E2_4065 - Orf21; putative lipoprotein, at 4,740,204 to 4,740,593 _4065 Pf6N2E2_4066 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 4,740,746 to 4,741,435 _4066 Pf6N2E2_4067 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 4,741,480 to 4,742,802 _4067 Position (kb) 4740 4741 4742Strain fitness (log2 ratio) -2 -1 0 1at 4740.047 kb on + strandat 4740.047 kb on + strandat 4740.047 kb on + strandat 4740.047 kb on + strandat 4740.048 kb on - strandat 4740.143 kb on + strandat 4740.272 kb on + strand, within Pf6N2E2_4065at 4740.272 kb on + strand, within Pf6N2E2_4065at 4740.272 kb on + strand, within Pf6N2E2_4065at 4740.273 kb on - strand, within Pf6N2E2_4065at 4740.273 kb on - strand, within Pf6N2E2_4065at 4740.289 kb on + strand, within Pf6N2E2_4065at 4740.289 kb on + strand, within Pf6N2E2_4065at 4740.289 kb on + strand, within Pf6N2E2_4065at 4740.289 kb on + strand, within Pf6N2E2_4065at 4740.289 kb on + strand, within Pf6N2E2_4065at 4740.290 kb on - strand, within Pf6N2E2_4065at 4740.290 kb on - strand, within Pf6N2E2_4065at 4740.307 kb on + strand, within Pf6N2E2_4065at 4740.452 kb on + strand, within Pf6N2E2_4065at 4740.452 kb on + strand, within Pf6N2E2_4065at 4740.452 kb on + strand, within Pf6N2E2_4065at 4740.452 kb on + strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.453 kb on - strand, within Pf6N2E2_4065at 4740.454 kb on + strand, within Pf6N2E2_4065at 4740.454 kb on + strand, within Pf6N2E2_4065at 4740.454 kb on + strand, within Pf6N2E2_4065at 4740.454 kb on + strand, within Pf6N2E2_4065at 4740.454 kb on + strand, within Pf6N2E2_4065at 4740.454 kb on + strand, within Pf6N2E2_4065at 4740.455 kb on - strand, within Pf6N2E2_4065at 4740.455 kb on - strand, within Pf6N2E2_4065at 4740.455 kb on - strand, within Pf6N2E2_4065at 4740.455 kb on - strand, within Pf6N2E2_4065at 4740.483 kb on + strand, within Pf6N2E2_4065at 4740.582 kb on - strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.586 kb on + strandat 4740.587 kb on - strandat 4740.587 kb on - strandat 4740.587 kb on - strandat 4740.587 kb on - strandat 4740.587 kb on - strandat 4740.637 kb on + strandat 4740.672 kb on + strandat 4740.672 kb on + strandat 4740.672 kb on + strandat 4740.672 kb on + strandat 4740.673 kb on - strandat 4740.673 kb on - strandat 4740.673 kb on - strandat 4740.692 kb on + strandat 4740.705 kb on + strandat 4740.705 kb on + strandat 4740.705 kb on + strandat 4740.705 kb on + strandat 4740.706 kb on - strandat 4740.706 kb on - strandat 4740.706 kb on - strandat 4740.706 kb on - strandat 4740.706 kb on - strandat 4740.724 kb on + strandat 4740.724 kb on + strandat 4740.725 kb on - strandat 4740.725 kb on - strandat 4740.725 kb on - strandat 4740.725 kb on - strandat 4740.725 kb on - strandat 4740.740 kb on + strandat 4740.828 kb on - strand, within Pf6N2E2_4066at 4740.976 kb on + strand, within Pf6N2E2_4066at 4740.977 kb on - strand, within Pf6N2E2_4066at 4741.052 kb on + strand, within Pf6N2E2_4066at 4741.052 kb on + strand, within Pf6N2E2_4066at 4741.053 kb on - strand, within Pf6N2E2_4066at 4741.053 kb on - strand, within Pf6N2E2_4066at 4741.187 kb on - strand, within Pf6N2E2_4066at 4741.268 kb on + strand, within Pf6N2E2_4066at 4741.268 kb on + strand, within Pf6N2E2_4066at 4741.269 kb on - strand, within Pf6N2E2_4066at 4741.269 kb on - strand, within Pf6N2E2_4066at 4741.269 kb on - strand, within Pf6N2E2_4066at 4741.269 kb on - strand, within Pf6N2E2_4066at 4741.269 kb on - strand, within Pf6N2E2_4066at 4741.313 kb on + strand, within Pf6N2E2_4066at 4741.314 kb on - strand, within Pf6N2E2_4066at 4741.314 kb on - strand, within Pf6N2E2_4066at 4741.314 kb on - strand, within Pf6N2E2_4066at 4741.314 kb on - strand, within Pf6N2E2_4066at 4741.314 kb on - strand, within Pf6N2E2_4066at 4741.376 kb on + strandat 4741.377 kb on - strandat 4741.389 kb on + strandat 4741.423 kb on + strandat 4741.423 kb on + strandat 4741.424 kb on - strandat 4741.564 kb on + strandat 4741.567 kb on + strandat 4741.567 kb on + strandat 4741.568 kb on - strandat 4741.601 kb on - strandat 4741.646 kb on + strand, within Pf6N2E2_4067at 4741.703 kb on + strand, within Pf6N2E2_4067at 4741.703 kb on + strand, within Pf6N2E2_4067at 4741.703 kb on + strand, within Pf6N2E2_4067at 4741.704 kb on - strand, within Pf6N2E2_4067at 4741.717 kb on + strand, within Pf6N2E2_4067at 4741.717 kb on + strand, within Pf6N2E2_4067at 4741.717 kb on + strand, within Pf6N2E2_4067at 4741.717 kb on + strand, within Pf6N2E2_4067at 4741.717 kb on + strand, within Pf6N2E2_4067at 4741.717 kb on + strand, within Pf6N2E2_4067at 4741.718 kb on - strand, within Pf6N2E2_4067at 4741.718 kb on - strand, within Pf6N2E2_4067at 4741.942 kb on + strand, within Pf6N2E2_4067at 4741.960 kb on + strand, within Pf6N2E2_4067at 4741.961 kb on - strand, within Pf6N2E2_4067at 4741.961 kb on - strand, within Pf6N2E2_4067at 4742.004 kb on - strand, within Pf6N2E2_4067at 4742.004 kb on - strand, within Pf6N2E2_4067at 4742.007 kb on + strand, within Pf6N2E2_4067at 4742.007 kb on + strand, within Pf6N2E2_4067at 4742.008 kb on - strand, within Pf6N2E2_4067at 4742.008 kb on - strand, within Pf6N2E2_4067at 4742.008 kb on - strand, within Pf6N2E2_4067at 4742.008 kb on - strand, within Pf6N2E2_4067at 4742.008 kb on - strand, within Pf6N2E2_4067at 4742.008 kb on - strand, within Pf6N2E2_4067at 4742.017 kb on + strand, within Pf6N2E2_4067at 4742.017 kb on + strand, within Pf6N2E2_4067at 4742.017 kb on + strand, within Pf6N2E2_4067at 4742.018 kb on - strand, within Pf6N2E2_4067at 4742.018 kb on - strand, within Pf6N2E2_4067at 4742.018 kb on - strand, within Pf6N2E2_4067at 4742.018 kb on - strand, within Pf6N2E2_4067at 4742.018 kb on - strand, within Pf6N2E2_4067at 4742.029 kb on + strand, within Pf6N2E2_4067at 4742.159 kb on - strand, within Pf6N2E2_4067

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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4,740,047 + +0.2
4,740,047 + -0.2
4,740,047 + +1.0
4,740,047 + +0.8
4,740,048 - -1.0
4,740,143 + +0.1
4,740,272 + Pf6N2E2_4065 0.17 +0.6
4,740,272 + Pf6N2E2_4065 0.17 -0.5
4,740,272 + Pf6N2E2_4065 0.17 +0.0
4,740,273 - Pf6N2E2_4065 0.18 +0.7
4,740,273 - Pf6N2E2_4065 0.18 +0.3
4,740,289 + Pf6N2E2_4065 0.22 +0.1
4,740,289 + Pf6N2E2_4065 0.22 +0.4
4,740,289 + Pf6N2E2_4065 0.22 +0.7
4,740,289 + Pf6N2E2_4065 0.22 +0.2
4,740,289 + Pf6N2E2_4065 0.22 +0.6
4,740,290 - Pf6N2E2_4065 0.22 +0.3
4,740,290 - Pf6N2E2_4065 0.22 +0.5
4,740,307 + Pf6N2E2_4065 0.26 +0.1
4,740,452 + Pf6N2E2_4065 0.64 +0.5
4,740,452 + Pf6N2E2_4065 0.64 -0.8
4,740,452 + Pf6N2E2_4065 0.64 -0.6
4,740,452 + Pf6N2E2_4065 0.64 +1.2
4,740,453 - Pf6N2E2_4065 0.64 +0.6
4,740,453 - Pf6N2E2_4065 0.64 +0.8
4,740,453 - Pf6N2E2_4065 0.64 -0.1
4,740,453 - Pf6N2E2_4065 0.64 -0.2
4,740,453 - Pf6N2E2_4065 0.64 -0.1
4,740,453 - Pf6N2E2_4065 0.64 +0.1
4,740,453 - Pf6N2E2_4065 0.64 -0.9
4,740,453 - Pf6N2E2_4065 0.64 -1.5
4,740,453 - Pf6N2E2_4065 0.64 +0.2
4,740,453 - Pf6N2E2_4065 0.64 -0.5
4,740,454 + Pf6N2E2_4065 0.64 -0.4
4,740,454 + Pf6N2E2_4065 0.64 -0.6
4,740,454 + Pf6N2E2_4065 0.64 +0.1
4,740,454 + Pf6N2E2_4065 0.64 +1.2
4,740,454 + Pf6N2E2_4065 0.64 -0.4
4,740,454 + Pf6N2E2_4065 0.64 +1.2
4,740,455 - Pf6N2E2_4065 0.64 -0.0
4,740,455 - Pf6N2E2_4065 0.64 -0.5
4,740,455 - Pf6N2E2_4065 0.64 +0.5
4,740,455 - Pf6N2E2_4065 0.64 -0.2
4,740,483 + Pf6N2E2_4065 0.72 -0.5
4,740,582 - +1.2
4,740,586 + +0.8
4,740,586 + +0.2
4,740,586 + -0.4
4,740,586 + -0.2
4,740,586 + +0.0
4,740,586 + -0.8
4,740,586 + +1.3
4,740,586 + +0.3
4,740,586 + +0.2
4,740,586 + -0.9
4,740,586 + +0.7
4,740,586 + -0.1
4,740,586 + +0.8
4,740,586 + +1.6
4,740,587 - +0.5
4,740,587 - +0.1
4,740,587 - +0.8
4,740,587 - -0.1
4,740,587 - +0.3
4,740,637 + +0.1
4,740,672 + -0.1
4,740,672 + -0.8
4,740,672 + -0.4
4,740,672 + +0.3
4,740,673 - -0.2
4,740,673 - -0.3
4,740,673 - -0.5
4,740,692 + +0.2
4,740,705 + +0.4
4,740,705 + -1.3
4,740,705 + -0.5
4,740,705 + +0.1
4,740,706 - -0.9
4,740,706 - -1.3
4,740,706 - -1.3
4,740,706 - -0.2
4,740,706 - -1.3
4,740,724 + +0.5
4,740,724 + -1.0
4,740,725 - +0.3
4,740,725 - -0.9
4,740,725 - -0.3
4,740,725 - -0.1
4,740,725 - -1.1
4,740,740 + +0.2
4,740,828 - Pf6N2E2_4066 0.12 +0.4
4,740,976 + Pf6N2E2_4066 0.33 -0.2
4,740,977 - Pf6N2E2_4066 0.33 -0.6
4,741,052 + Pf6N2E2_4066 0.44 -1.9
4,741,052 + Pf6N2E2_4066 0.44 -0.4
4,741,053 - Pf6N2E2_4066 0.44 -1.1
4,741,053 - Pf6N2E2_4066 0.44 -0.4
4,741,187 - Pf6N2E2_4066 0.64 -0.7
4,741,268 + Pf6N2E2_4066 0.76 -0.4
4,741,268 + Pf6N2E2_4066 0.76 -0.3
4,741,269 - Pf6N2E2_4066 0.76 -0.5
4,741,269 - Pf6N2E2_4066 0.76 -0.8
4,741,269 - Pf6N2E2_4066 0.76 -0.6
4,741,269 - Pf6N2E2_4066 0.76 +0.1
4,741,269 - Pf6N2E2_4066 0.76 -0.5
4,741,313 + Pf6N2E2_4066 0.82 -0.4
4,741,314 - Pf6N2E2_4066 0.82 -0.5
4,741,314 - Pf6N2E2_4066 0.82 -0.7
4,741,314 - Pf6N2E2_4066 0.82 -0.4
4,741,314 - Pf6N2E2_4066 0.82 -1.0
4,741,314 - Pf6N2E2_4066 0.82 -0.1
4,741,376 + -0.4
4,741,377 - -0.5
4,741,389 + +0.3
4,741,423 + -0.4
4,741,423 + +0.6
4,741,424 - -0.6
4,741,564 + -0.2
4,741,567 + -0.9
4,741,567 + -0.5
4,741,568 - -0.4
4,741,601 - -1.0
4,741,646 + Pf6N2E2_4067 0.13 -0.2
4,741,703 + Pf6N2E2_4067 0.17 -0.4
4,741,703 + Pf6N2E2_4067 0.17 -1.1
4,741,703 + Pf6N2E2_4067 0.17 -0.5
4,741,704 - Pf6N2E2_4067 0.17 +0.3
4,741,717 + Pf6N2E2_4067 0.18 -0.0
4,741,717 + Pf6N2E2_4067 0.18 +0.8
4,741,717 + Pf6N2E2_4067 0.18 -0.3
4,741,717 + Pf6N2E2_4067 0.18 +0.8
4,741,717 + Pf6N2E2_4067 0.18 -0.1
4,741,717 + Pf6N2E2_4067 0.18 -0.6
4,741,718 - Pf6N2E2_4067 0.18 -0.0
4,741,718 - Pf6N2E2_4067 0.18 +0.5
4,741,942 + Pf6N2E2_4067 0.35 -0.2
4,741,960 + Pf6N2E2_4067 0.36 -1.7
4,741,961 - Pf6N2E2_4067 0.36 +0.9
4,741,961 - Pf6N2E2_4067 0.36 +0.2
4,742,004 - Pf6N2E2_4067 0.40 -0.8
4,742,004 - Pf6N2E2_4067 0.40 +0.6
4,742,007 + Pf6N2E2_4067 0.40 -0.2
4,742,007 + Pf6N2E2_4067 0.40 -0.9
4,742,008 - Pf6N2E2_4067 0.40 -0.5
4,742,008 - Pf6N2E2_4067 0.40 +1.3
4,742,008 - Pf6N2E2_4067 0.40 +0.2
4,742,008 - Pf6N2E2_4067 0.40 -0.4
4,742,008 - Pf6N2E2_4067 0.40 +0.9
4,742,008 - Pf6N2E2_4067 0.40 -0.9
4,742,017 + Pf6N2E2_4067 0.41 +0.5
4,742,017 + Pf6N2E2_4067 0.41 -0.6
4,742,017 + Pf6N2E2_4067 0.41 +1.0
4,742,018 - Pf6N2E2_4067 0.41 -0.8
4,742,018 - Pf6N2E2_4067 0.41 -0.1
4,742,018 - Pf6N2E2_4067 0.41 +0.2
4,742,018 - Pf6N2E2_4067 0.41 -0.4
4,742,018 - Pf6N2E2_4067 0.41 -1.1
4,742,029 + Pf6N2E2_4067 0.41 +0.2
4,742,159 - Pf6N2E2_4067 0.51 -0.4

Or see this region's nucleotide sequence