Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4060 and Pf6N2E2_4061 are separated by 30 nucleotides Pf6N2E2_4061 and Pf6N2E2_4062 overlap by 4 nucleotides Pf6N2E2_4062 and Pf6N2E2_4063 overlap by 2 nucleotides Pf6N2E2_4063 and Pf6N2E2_4064 overlap by 1 nucleotides
Pf6N2E2_4060 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 4,737,038 to 4,738,198
_4060
Pf6N2E2_4061 - Rubredoxin, at 4,738,229 to 4,738,396
_4061
Pf6N2E2_4062 - hypothetical protein, at 4,738,393 to 4,738,548
_4062
Pf6N2E2_4063 - Chorismate--pyruvate lyase (EC 4.1.3.40), at 4,738,547 to 4,739,152
_4063
Pf6N2E2_4064 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 4,739,152 to 4,740,042
_4064
Position (kb)
4738
4739
4740 Strain fitness (log2 ratio)
-2
-1
0
1 at 4737.614 kb on + strand, within Pf6N2E2_4060 at 4737.614 kb on + strand, within Pf6N2E2_4060 at 4737.615 kb on - strand, within Pf6N2E2_4060 at 4737.687 kb on + strand, within Pf6N2E2_4060 at 4737.688 kb on - strand, within Pf6N2E2_4060 at 4737.688 kb on - strand, within Pf6N2E2_4060 at 4737.688 kb on - strand, within Pf6N2E2_4060 at 4737.789 kb on + strand, within Pf6N2E2_4060 at 4737.789 kb on + strand, within Pf6N2E2_4060 at 4737.789 kb on + strand, within Pf6N2E2_4060 at 4737.789 kb on + strand, within Pf6N2E2_4060 at 4737.790 kb on - strand, within Pf6N2E2_4060 at 4737.790 kb on - strand, within Pf6N2E2_4060 at 4737.790 kb on - strand, within Pf6N2E2_4060 at 4737.888 kb on + strand, within Pf6N2E2_4060 at 4737.889 kb on - strand, within Pf6N2E2_4060 at 4738.065 kb on + strand, within Pf6N2E2_4060 at 4738.144 kb on - strand at 4738.144 kb on - strand at 4738.359 kb on + strand, within Pf6N2E2_4061 at 4738.360 kb on - strand, within Pf6N2E2_4061 at 4738.378 kb on + strand, within Pf6N2E2_4061 at 4738.378 kb on + strand, within Pf6N2E2_4061 at 4738.378 kb on + strand, within Pf6N2E2_4061 at 4738.378 kb on + strand, within Pf6N2E2_4061 at 4738.379 kb on - strand, within Pf6N2E2_4061 at 4738.379 kb on - strand, within Pf6N2E2_4061 at 4738.379 kb on - strand, within Pf6N2E2_4061 at 4738.379 kb on - strand, within Pf6N2E2_4061 at 4738.379 kb on - strand, within Pf6N2E2_4061 at 4738.402 kb on + strand at 4738.402 kb on + strand at 4738.403 kb on - strand at 4738.403 kb on - strand at 4738.403 kb on - strand at 4738.433 kb on + strand, within Pf6N2E2_4062 at 4738.433 kb on + strand, within Pf6N2E2_4062 at 4738.433 kb on + strand, within Pf6N2E2_4062 at 4738.433 kb on + strand, within Pf6N2E2_4062 at 4738.433 kb on + strand, within Pf6N2E2_4062 at 4738.434 kb on - strand, within Pf6N2E2_4062 at 4738.434 kb on - strand, within Pf6N2E2_4062 at 4738.551 kb on + strand at 4738.551 kb on + strand at 4738.552 kb on - strand at 4738.552 kb on - strand at 4738.552 kb on - strand at 4738.597 kb on + strand at 4738.835 kb on + strand, within Pf6N2E2_4063 at 4738.835 kb on + strand, within Pf6N2E2_4063 at 4738.835 kb on + strand, within Pf6N2E2_4063 at 4738.835 kb on + strand, within Pf6N2E2_4063 at 4738.836 kb on - strand, within Pf6N2E2_4063 at 4738.836 kb on - strand, within Pf6N2E2_4063 at 4738.836 kb on - strand, within Pf6N2E2_4063 at 4738.953 kb on + strand, within Pf6N2E2_4063 at 4739.088 kb on + strand, within Pf6N2E2_4063 at 4739.089 kb on - strand, within Pf6N2E2_4063 at 4739.089 kb on - strand, within Pf6N2E2_4063 at 4739.089 kb on - strand, within Pf6N2E2_4063 at 4739.135 kb on + strand at 4739.155 kb on + strand at 4739.155 kb on + strand at 4739.155 kb on + strand at 4739.155 kb on + strand at 4739.155 kb on + strand at 4740.047 kb on + strand at 4740.047 kb on + strand at 4740.047 kb on + strand at 4740.047 kb on + strand at 4740.048 kb on - strand at 4740.143 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 4,737,614 + Pf6N2E2_4060 0.50 +0.3 4,737,614 + Pf6N2E2_4060 0.50 +0.6 4,737,615 - Pf6N2E2_4060 0.50 +1.3 4,737,687 + Pf6N2E2_4060 0.56 +0.3 4,737,688 - Pf6N2E2_4060 0.56 -0.3 4,737,688 - Pf6N2E2_4060 0.56 -0.2 4,737,688 - Pf6N2E2_4060 0.56 -0.2 4,737,789 + Pf6N2E2_4060 0.65 -0.5 4,737,789 + Pf6N2E2_4060 0.65 +0.1 4,737,789 + Pf6N2E2_4060 0.65 +0.2 4,737,789 + Pf6N2E2_4060 0.65 +0.6 4,737,790 - Pf6N2E2_4060 0.65 +0.7 4,737,790 - Pf6N2E2_4060 0.65 +0.1 4,737,790 - Pf6N2E2_4060 0.65 -0.3 4,737,888 + Pf6N2E2_4060 0.73 -0.3 4,737,889 - Pf6N2E2_4060 0.73 -0.2 4,738,065 + Pf6N2E2_4060 0.88 +0.6 4,738,144 - -0.3 4,738,144 - -0.4 4,738,359 + Pf6N2E2_4061 0.77 -1.0 4,738,360 - Pf6N2E2_4061 0.78 +0.4 4,738,378 + Pf6N2E2_4061 0.89 -0.2 4,738,378 + Pf6N2E2_4061 0.89 +0.2 4,738,378 + Pf6N2E2_4061 0.89 -0.0 4,738,378 + Pf6N2E2_4061 0.89 -0.1 4,738,379 - Pf6N2E2_4061 0.89 -0.4 4,738,379 - Pf6N2E2_4061 0.89 +0.4 4,738,379 - Pf6N2E2_4061 0.89 +0.4 4,738,379 - Pf6N2E2_4061 0.89 -0.0 4,738,379 - Pf6N2E2_4061 0.89 +1.0 4,738,402 + -0.9 4,738,402 + -0.2 4,738,403 - -0.6 4,738,403 - -0.4 4,738,403 - -0.5 4,738,433 + Pf6N2E2_4062 0.26 +1.1 4,738,433 + Pf6N2E2_4062 0.26 -0.3 4,738,433 + Pf6N2E2_4062 0.26 +0.9 4,738,433 + Pf6N2E2_4062 0.26 +0.0 4,738,433 + Pf6N2E2_4062 0.26 +0.4 4,738,434 - Pf6N2E2_4062 0.26 -0.3 4,738,434 - Pf6N2E2_4062 0.26 +0.3 4,738,551 + -0.1 4,738,551 + +0.3 4,738,552 - -0.4 4,738,552 - -0.6 4,738,552 - -0.2 4,738,597 + +1.1 4,738,835 + Pf6N2E2_4063 0.48 +0.1 4,738,835 + Pf6N2E2_4063 0.48 -0.2 4,738,835 + Pf6N2E2_4063 0.48 -1.2 4,738,835 + Pf6N2E2_4063 0.48 +0.1 4,738,836 - Pf6N2E2_4063 0.48 -1.3 4,738,836 - Pf6N2E2_4063 0.48 -2.0 4,738,836 - Pf6N2E2_4063 0.48 +0.3 4,738,953 + Pf6N2E2_4063 0.67 -0.4 4,739,088 + Pf6N2E2_4063 0.89 -0.4 4,739,089 - Pf6N2E2_4063 0.89 -0.7 4,739,089 - Pf6N2E2_4063 0.89 -0.4 4,739,089 - Pf6N2E2_4063 0.89 -0.7 4,739,135 + +0.3 4,739,155 + -0.4 4,739,155 + -0.4 4,739,155 + +0.3 4,739,155 + +0.4 4,739,155 + -1.0 4,740,047 + +0.2 4,740,047 + -0.2 4,740,047 + +1.0 4,740,047 + +0.8 4,740,048 - -1.0 4,740,143 + +0.1
Or see this region's nucleotide sequence