Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00140

Experiment: PYE 4C survival rep3 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00139 and CCNA_00140 are separated by 108 nucleotidesCCNA_00140 and CCNA_00141 are separated by 55 nucleotidesCCNA_00141 and CCNA_00142 are separated by 1 nucleotides CCNA_00139: CCNA_00139 - magnesium chelatase subunit ChlI-like ATPase, at 150,993 to 152,600 _00139 CCNA_00140: CCNA_00140 - glutathione synthetase, at 152,709 to 153,662 _00140 CCNA_00141: CCNA_00141 - tetratricopeptide repeat family protein, at 153,718 to 154,533 _00141 CCNA_00142: CCNA_00142 - endonuclease, at 154,535 to 154,912 _00142 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 151.749 kb on + strand, within CCNA_00139at 151.753 kb on - strand, within CCNA_00139at 151.762 kb on + strand, within CCNA_00139at 151.770 kb on - strand, within CCNA_00139at 151.772 kb on + strand, within CCNA_00139at 151.775 kb on - strand, within CCNA_00139at 151.781 kb on + strand, within CCNA_00139at 151.799 kb on - strand, within CCNA_00139at 151.845 kb on - strand, within CCNA_00139at 151.870 kb on + strand, within CCNA_00139at 151.872 kb on + strand, within CCNA_00139at 151.878 kb on - strand, within CCNA_00139at 151.890 kb on + strand, within CCNA_00139at 151.898 kb on - strand, within CCNA_00139at 151.898 kb on - strand, within CCNA_00139at 151.901 kb on + strand, within CCNA_00139at 151.912 kb on + strand, within CCNA_00139at 151.936 kb on - strand, within CCNA_00139at 151.936 kb on - strand, within CCNA_00139at 151.962 kb on - strand, within CCNA_00139at 151.967 kb on - strand, within CCNA_00139at 151.967 kb on - strand, within CCNA_00139at 151.967 kb on - strand, within CCNA_00139at 152.013 kb on + strand, within CCNA_00139at 152.016 kb on - strand, within CCNA_00139at 152.036 kb on + strand, within CCNA_00139at 152.040 kb on - strand, within CCNA_00139at 152.048 kb on - strand, within CCNA_00139at 152.078 kb on + strand, within CCNA_00139at 152.088 kb on + strand, within CCNA_00139at 152.128 kb on - strand, within CCNA_00139at 152.165 kb on - strand, within CCNA_00139at 152.165 kb on - strand, within CCNA_00139at 152.166 kb on - strand, within CCNA_00139at 152.188 kb on + strand, within CCNA_00139at 152.193 kb on + strand, within CCNA_00139at 152.196 kb on - strand, within CCNA_00139at 152.201 kb on - strand, within CCNA_00139at 152.201 kb on - strand, within CCNA_00139at 152.213 kb on - strand, within CCNA_00139at 152.266 kb on + strand, within CCNA_00139at 152.274 kb on - strand, within CCNA_00139at 152.274 kb on - strand, within CCNA_00139at 152.305 kb on - strand, within CCNA_00139at 152.329 kb on - strand, within CCNA_00139at 152.366 kb on - strand, within CCNA_00139at 152.382 kb on - strand, within CCNA_00139at 152.441 kb on - strandat 152.532 kb on - strandat 152.537 kb on - strandat 152.574 kb on - strandat 152.615 kb on - strandat 152.626 kb on - strandat 152.716 kb on - strandat 152.716 kb on - strandat 153.660 kb on + strandat 153.668 kb on + strandat 153.676 kb on - strandat 153.683 kb on + strandat 153.691 kb on - strandat 153.694 kb on + strandat 153.716 kb on + strandat 153.731 kb on + strandat 153.799 kb on - strandat 153.810 kb on - strand, within CCNA_00141at 153.880 kb on + strand, within CCNA_00141at 153.880 kb on - strand, within CCNA_00141at 153.881 kb on - strand, within CCNA_00141at 153.895 kb on + strand, within CCNA_00141at 153.900 kb on + strand, within CCNA_00141at 153.903 kb on - strand, within CCNA_00141at 153.903 kb on - strand, within CCNA_00141at 153.903 kb on - strand, within CCNA_00141at 153.933 kb on - strand, within CCNA_00141at 153.970 kb on + strand, within CCNA_00141at 153.970 kb on + strand, within CCNA_00141at 153.975 kb on + strand, within CCNA_00141at 153.978 kb on - strand, within CCNA_00141at 153.978 kb on - strand, within CCNA_00141at 153.978 kb on - strand, within CCNA_00141at 153.991 kb on + strand, within CCNA_00141at 154.033 kb on + strand, within CCNA_00141at 154.041 kb on - strand, within CCNA_00141at 154.041 kb on - strand, within CCNA_00141at 154.073 kb on - strand, within CCNA_00141at 154.073 kb on - strand, within CCNA_00141at 154.080 kb on - strand, within CCNA_00141at 154.081 kb on + strand, within CCNA_00141at 154.099 kb on - strand, within CCNA_00141at 154.101 kb on + strand, within CCNA_00141at 154.122 kb on + strand, within CCNA_00141at 154.163 kb on + strand, within CCNA_00141at 154.173 kb on + strand, within CCNA_00141at 154.181 kb on - strand, within CCNA_00141at 154.211 kb on - strand, within CCNA_00141at 154.226 kb on + strand, within CCNA_00141at 154.235 kb on + strand, within CCNA_00141at 154.243 kb on - strand, within CCNA_00141at 154.245 kb on + strand, within CCNA_00141at 154.278 kb on + strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.286 kb on - strand, within CCNA_00141at 154.331 kb on + strand, within CCNA_00141at 154.332 kb on - strand, within CCNA_00141at 154.332 kb on - strand, within CCNA_00141at 154.332 kb on - strand, within CCNA_00141at 154.401 kb on - strand, within CCNA_00141at 154.401 kb on - strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.442 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.447 kb on + strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.450 kb on - strand, within CCNA_00141at 154.455 kb on - strandat 154.455 kb on - strandat 154.455 kb on - strandat 154.455 kb on - strandat 154.457 kb on + strandat 154.465 kb on - strandat 154.465 kb on - strandat 154.496 kb on + strandat 154.511 kb on + strandat 154.521 kb on + strandat 154.533 kb on + strandat 154.587 kb on + strand, within CCNA_00142at 154.619 kb on + strand, within CCNA_00142at 154.624 kb on + strand, within CCNA_00142at 154.632 kb on - strand, within CCNA_00142at 154.632 kb on - strand, within CCNA_00142

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep3 58 days
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151,749 + CCNA_00139 0.47 -1.4
151,753 - CCNA_00139 0.47 +1.0
151,762 + CCNA_00139 0.48 +0.1
151,770 - CCNA_00139 0.48 -0.3
151,772 + CCNA_00139 0.48 +2.2
151,775 - CCNA_00139 0.49 +0.2
151,781 + CCNA_00139 0.49 -0.2
151,799 - CCNA_00139 0.50 -0.1
151,845 - CCNA_00139 0.53 +0.2
151,870 + CCNA_00139 0.55 -0.8
151,872 + CCNA_00139 0.55 -0.4
151,878 - CCNA_00139 0.55 +1.2
151,890 + CCNA_00139 0.56 -0.8
151,898 - CCNA_00139 0.56 +0.5
151,898 - CCNA_00139 0.56 +0.9
151,901 + CCNA_00139 0.56 +0.7
151,912 + CCNA_00139 0.57 -2.5
151,936 - CCNA_00139 0.59 -0.0
151,936 - CCNA_00139 0.59 -2.1
151,962 - CCNA_00139 0.60 +0.1
151,967 - CCNA_00139 0.61 -0.0
151,967 - CCNA_00139 0.61 -0.2
151,967 - CCNA_00139 0.61 -0.9
152,013 + CCNA_00139 0.63 -2.7
152,016 - CCNA_00139 0.64 +1.2
152,036 + CCNA_00139 0.65 +2.0
152,040 - CCNA_00139 0.65 +1.5
152,048 - CCNA_00139 0.66 -0.5
152,078 + CCNA_00139 0.67 +1.1
152,088 + CCNA_00139 0.68 -1.4
152,128 - CCNA_00139 0.71 -1.0
152,165 - CCNA_00139 0.73 +0.4
152,165 - CCNA_00139 0.73 -0.7
152,166 - CCNA_00139 0.73 -0.5
152,188 + CCNA_00139 0.74 +1.5
152,193 + CCNA_00139 0.75 +0.1
152,196 - CCNA_00139 0.75 -1.3
152,201 - CCNA_00139 0.75 -0.7
152,201 - CCNA_00139 0.75 -0.4
152,213 - CCNA_00139 0.76 +0.7
152,266 + CCNA_00139 0.79 -2.4
152,274 - CCNA_00139 0.80 +0.1
152,274 - CCNA_00139 0.80 -1.9
152,305 - CCNA_00139 0.82 +0.6
152,329 - CCNA_00139 0.83 +0.1
152,366 - CCNA_00139 0.85 +0.6
152,382 - CCNA_00139 0.86 +0.7
152,441 - -0.8
152,532 - -0.6
152,537 - +1.7
152,574 - -1.2
152,615 - +1.4
152,626 - +1.2
152,716 - -1.2
152,716 - +1.4
153,660 + +0.1
153,668 + -0.0
153,676 - -2.9
153,683 + +0.8
153,691 - -0.4
153,694 + -0.7
153,716 + -0.2
153,731 + -1.9
153,799 - +0.3
153,810 - CCNA_00141 0.11 -1.3
153,880 + CCNA_00141 0.20 -0.6
153,880 - CCNA_00141 0.20 -0.1
153,881 - CCNA_00141 0.20 +0.4
153,895 + CCNA_00141 0.22 -0.5
153,900 + CCNA_00141 0.22 -1.2
153,903 - CCNA_00141 0.23 +0.9
153,903 - CCNA_00141 0.23 -0.2
153,903 - CCNA_00141 0.23 +1.5
153,933 - CCNA_00141 0.26 +0.1
153,970 + CCNA_00141 0.31 -3.0
153,970 + CCNA_00141 0.31 -0.3
153,975 + CCNA_00141 0.31 -0.8
153,978 - CCNA_00141 0.32 +0.3
153,978 - CCNA_00141 0.32 -0.4
153,978 - CCNA_00141 0.32 +3.5
153,991 + CCNA_00141 0.33 +0.1
154,033 + CCNA_00141 0.39 -1.8
154,041 - CCNA_00141 0.40 +1.6
154,041 - CCNA_00141 0.40 -1.3
154,073 - CCNA_00141 0.44 -0.7
154,073 - CCNA_00141 0.44 -0.0
154,080 - CCNA_00141 0.44 -0.5
154,081 + CCNA_00141 0.44 +0.8
154,099 - CCNA_00141 0.47 +0.3
154,101 + CCNA_00141 0.47 -0.7
154,122 + CCNA_00141 0.50 +0.3
154,163 + CCNA_00141 0.55 -0.3
154,173 + CCNA_00141 0.56 -0.9
154,181 - CCNA_00141 0.57 +0.2
154,211 - CCNA_00141 0.60 +0.8
154,226 + CCNA_00141 0.62 -0.9
154,235 + CCNA_00141 0.63 -1.3
154,243 - CCNA_00141 0.64 +0.5
154,245 + CCNA_00141 0.65 -0.9
154,278 + CCNA_00141 0.69 +2.0
154,286 - CCNA_00141 0.70 -0.9
154,286 - CCNA_00141 0.70 -0.3
154,286 - CCNA_00141 0.70 +1.8
154,331 + CCNA_00141 0.75 -1.2
154,332 - CCNA_00141 0.75 +0.3
154,332 - CCNA_00141 0.75 -0.0
154,332 - CCNA_00141 0.75 -0.0
154,401 - CCNA_00141 0.84 +0.8
154,401 - CCNA_00141 0.84 -0.8
154,442 + CCNA_00141 0.89 -1.0
154,442 + CCNA_00141 0.89 -1.2
154,442 + CCNA_00141 0.89 -0.0
154,442 + CCNA_00141 0.89 -0.3
154,442 + CCNA_00141 0.89 +0.6
154,442 + CCNA_00141 0.89 +1.2
154,442 + CCNA_00141 0.89 -1.3
154,442 + CCNA_00141 0.89 -0.9
154,442 + CCNA_00141 0.89 -0.8
154,442 + CCNA_00141 0.89 -0.9
154,442 + CCNA_00141 0.89 -0.7
154,442 + CCNA_00141 0.89 -0.8
154,447 + CCNA_00141 0.89 -1.9
154,447 + CCNA_00141 0.89 -1.7
154,450 - CCNA_00141 0.90 +2.0
154,450 - CCNA_00141 0.90 +1.9
154,450 - CCNA_00141 0.90 -0.2
154,450 - CCNA_00141 0.90 -0.4
154,450 - CCNA_00141 0.90 -1.1
154,455 - -0.4
154,455 - +1.6
154,455 - -0.7
154,455 - -1.5
154,457 + -0.5
154,465 - +0.6
154,465 - -0.4
154,496 + -1.9
154,511 + +1.3
154,521 + -1.4
154,533 + -1.0
154,587 + CCNA_00142 0.14 +0.4
154,619 + CCNA_00142 0.22 -1.5
154,624 + CCNA_00142 0.24 +0.8
154,632 - CCNA_00142 0.26 +0.4
154,632 - CCNA_00142 0.26 +0.4

Or see this region's nucleotide sequence