Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00283

Experiment: PYE 4C survival rep2 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00281 and CCNA_00282 are separated by 91 nucleotidesCCNA_00282 and CCNA_00283 are separated by 117 nucleotidesCCNA_00283 and CCNA_00284 overlap by 4 nucleotidesCCNA_00284 and CCNA_00285 overlap by 4 nucleotides CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567 _00281 CCNA_00282: CCNA_00282 - conserved cell surface protein, at 294,659 to 294,991 _00282 CCNA_00283: CCNA_00283 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, at 295,109 to 295,969 _00283 CCNA_00284: CCNA_00284 - pyrimidine 5'-nucleotidase family protein, at 295,966 to 296,631 _00284 CCNA_00285: CCNA_00285 - acetylglutamate kinase, at 296,628 to 297,542 _00285 Position (kb) 295 296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 294.289 kb on + strand, within CCNA_00281at 294.419 kb on + strand, within CCNA_00281at 294.609 kb on + strandat 294.609 kb on + strandat 294.617 kb on - strandat 294.632 kb on + strandat 294.632 kb on + strandat 294.640 kb on - strandat 294.640 kb on - strandat 294.650 kb on + strandat 294.655 kb on + strandat 294.663 kb on - strandat 294.663 kb on - strandat 294.677 kb on - strandat 294.745 kb on + strand, within CCNA_00282at 294.745 kb on + strand, within CCNA_00282at 294.746 kb on + strand, within CCNA_00282at 294.791 kb on + strand, within CCNA_00282at 294.799 kb on - strand, within CCNA_00282at 294.849 kb on + strand, within CCNA_00282at 294.869 kb on + strand, within CCNA_00282at 294.877 kb on - strand, within CCNA_00282at 294.877 kb on - strand, within CCNA_00282at 294.912 kb on - strand, within CCNA_00282at 294.912 kb on - strand, within CCNA_00282at 294.912 kb on - strand, within CCNA_00282at 294.994 kb on - strandat 294.995 kb on - strandat 295.041 kb on - strandat 295.050 kb on - strandat 295.078 kb on + strandat 295.107 kb on + strandat 295.962 kb on - strandat 296.044 kb on + strand, within CCNA_00284at 296.053 kb on - strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.068 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.073 kb on + strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.076 kb on - strand, within CCNA_00284at 296.080 kb on + strand, within CCNA_00284at 296.081 kb on - strand, within CCNA_00284at 296.081 kb on - strand, within CCNA_00284at 296.088 kb on - strand, within CCNA_00284at 296.153 kb on + strand, within CCNA_00284at 296.156 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.183 kb on - strand, within CCNA_00284at 296.269 kb on + strand, within CCNA_00284at 296.346 kb on + strand, within CCNA_00284at 296.352 kb on + strand, within CCNA_00284at 296.352 kb on + strand, within CCNA_00284at 296.360 kb on - strand, within CCNA_00284at 296.360 kb on - strand, within CCNA_00284at 296.366 kb on - strand, within CCNA_00284at 296.366 kb on - strand, within CCNA_00284at 296.437 kb on + strand, within CCNA_00284at 296.445 kb on - strand, within CCNA_00284at 296.447 kb on + strand, within CCNA_00284at 296.449 kb on + strand, within CCNA_00284at 296.449 kb on + strand, within CCNA_00284at 296.450 kb on - strand, within CCNA_00284at 296.450 kb on - strand, within CCNA_00284at 296.455 kb on - strand, within CCNA_00284at 296.455 kb on - strand, within CCNA_00284at 296.619 kb on + strandat 296.620 kb on - strandat 296.620 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep2 58 days
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294,289 + CCNA_00281 0.70 +2.0
294,419 + CCNA_00281 0.84 +2.0
294,609 + -1.1
294,609 + +0.5
294,617 - -1.5
294,632 + +0.5
294,632 + -0.3
294,640 - -0.1
294,640 - -0.4
294,650 + -0.2
294,655 + -0.1
294,663 - +2.0
294,663 - -0.4
294,677 - -3.3
294,745 + CCNA_00282 0.26 -1.8
294,745 + CCNA_00282 0.26 +0.6
294,746 + CCNA_00282 0.26 +0.5
294,791 + CCNA_00282 0.40 +1.0
294,799 - CCNA_00282 0.42 -0.0
294,849 + CCNA_00282 0.57 +0.8
294,869 + CCNA_00282 0.63 +0.4
294,877 - CCNA_00282 0.65 +1.0
294,877 - CCNA_00282 0.65 +0.1
294,912 - CCNA_00282 0.76 +1.2
294,912 - CCNA_00282 0.76 +0.1
294,912 - CCNA_00282 0.76 +2.5
294,994 - -0.4
294,995 - -0.1
295,041 - -0.6
295,050 - -0.8
295,078 + +0.3
295,107 + -0.8
295,962 - +0.4
296,044 + CCNA_00284 0.12 +2.5
296,053 - CCNA_00284 0.13 +0.5
296,068 + CCNA_00284 0.15 +0.7
296,068 + CCNA_00284 0.15 +1.6
296,068 + CCNA_00284 0.15 -1.5
296,073 + CCNA_00284 0.16 +1.5
296,073 + CCNA_00284 0.16 +0.5
296,073 + CCNA_00284 0.16 +0.4
296,076 - CCNA_00284 0.17 +0.7
296,076 - CCNA_00284 0.17 +1.8
296,076 - CCNA_00284 0.17 +1.8
296,076 - CCNA_00284 0.17 +1.6
296,076 - CCNA_00284 0.17 +1.0
296,076 - CCNA_00284 0.17 -0.4
296,080 + CCNA_00284 0.17 +0.4
296,081 - CCNA_00284 0.17 +0.1
296,081 - CCNA_00284 0.17 +1.2
296,088 - CCNA_00284 0.18 +1.0
296,153 + CCNA_00284 0.28 +0.3
296,156 - CCNA_00284 0.29 +1.6
296,183 - CCNA_00284 0.33 +0.6
296,183 - CCNA_00284 0.33 +1.7
296,183 - CCNA_00284 0.33 +0.0
296,183 - CCNA_00284 0.33 +0.1
296,269 + CCNA_00284 0.45 -2.1
296,346 + CCNA_00284 0.57 -0.5
296,352 + CCNA_00284 0.58 -1.7
296,352 + CCNA_00284 0.58 -0.3
296,360 - CCNA_00284 0.59 +0.5
296,360 - CCNA_00284 0.59 +1.1
296,366 - CCNA_00284 0.60 +1.2
296,366 - CCNA_00284 0.60 +0.5
296,437 + CCNA_00284 0.71 -0.8
296,445 - CCNA_00284 0.72 +3.3
296,447 + CCNA_00284 0.72 -0.3
296,449 + CCNA_00284 0.73 +1.3
296,449 + CCNA_00284 0.73 +2.2
296,450 - CCNA_00284 0.73 +1.4
296,450 - CCNA_00284 0.73 +0.8
296,455 - CCNA_00284 0.73 +0.6
296,455 - CCNA_00284 0.73 +1.2
296,619 + +0.8
296,620 - -0.8
296,620 - +0.5

Or see this region's nucleotide sequence