Experiment: Zinc chloride 0.0000015625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4318 and Pf6N2E2_4319 are separated by 248 nucleotides Pf6N2E2_4319 and Pf6N2E2_4320 are separated by 35 nucleotides
Pf6N2E2_4318 - VgrG-3 protein, at 5,038,983 to 5,040,914
_4318
Pf6N2E2_4319 - FIG00960169: hypothetical protein, at 5,041,163 to 5,041,597
_4319
Pf6N2E2_4320 - Rhs family protein, at 5,041,633 to 5,042,898
_4320
Position (kb)
5041
5042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5040.314 kb on - strand, within Pf6N2E2_4318 at 5040.316 kb on + strand, within Pf6N2E2_4318 at 5040.410 kb on - strand, within Pf6N2E2_4318 at 5040.410 kb on - strand, within Pf6N2E2_4318 at 5040.410 kb on - strand, within Pf6N2E2_4318 at 5040.413 kb on - strand, within Pf6N2E2_4318 at 5040.413 kb on - strand, within Pf6N2E2_4318 at 5040.413 kb on - strand, within Pf6N2E2_4318 at 5040.478 kb on + strand, within Pf6N2E2_4318 at 5040.478 kb on + strand, within Pf6N2E2_4318 at 5040.803 kb on - strand at 5040.803 kb on - strand at 5040.909 kb on + strand at 5040.909 kb on + strand at 5040.909 kb on + strand at 5040.910 kb on - strand at 5040.925 kb on + strand at 5041.035 kb on + strand at 5041.035 kb on + strand at 5041.035 kb on + strand at 5041.036 kb on - strand at 5041.036 kb on - strand at 5041.057 kb on + strand at 5041.057 kb on + strand at 5041.057 kb on + strand at 5041.057 kb on + strand at 5041.057 kb on + strand at 5041.057 kb on + strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.058 kb on - strand at 5041.108 kb on + strand at 5041.108 kb on + strand at 5041.109 kb on - strand at 5041.116 kb on + strand at 5041.117 kb on - strand at 5041.159 kb on + strand at 5041.231 kb on + strand, within Pf6N2E2_4319 at 5041.232 kb on - strand, within Pf6N2E2_4319 at 5041.261 kb on + strand, within Pf6N2E2_4319 at 5041.262 kb on - strand, within Pf6N2E2_4319 at 5041.322 kb on + strand, within Pf6N2E2_4319 at 5041.414 kb on + strand, within Pf6N2E2_4319 at 5041.414 kb on + strand, within Pf6N2E2_4319 at 5041.414 kb on + strand, within Pf6N2E2_4319 at 5041.414 kb on + strand, within Pf6N2E2_4319 at 5041.428 kb on - strand, within Pf6N2E2_4319 at 5041.428 kb on - strand, within Pf6N2E2_4319 at 5041.483 kb on + strand, within Pf6N2E2_4319 at 5041.483 kb on + strand, within Pf6N2E2_4319 at 5041.605 kb on + strand at 5041.606 kb on - strand at 5041.606 kb on - strand at 5041.606 kb on - strand at 5041.619 kb on + strand at 5041.619 kb on + strand at 5041.619 kb on + strand at 5041.620 kb on - strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.625 kb on + strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.626 kb on - strand at 5041.670 kb on + strand at 5041.671 kb on - strand at 5042.283 kb on + strand, within Pf6N2E2_4320 at 5042.284 kb on - strand, within Pf6N2E2_4320 at 5042.303 kb on + strand, within Pf6N2E2_4320 at 5042.425 kb on + strand, within Pf6N2E2_4320 at 5042.425 kb on + strand, within Pf6N2E2_4320 at 5042.426 kb on - strand, within Pf6N2E2_4320 at 5042.494 kb on + strand, within Pf6N2E2_4320 at 5042.494 kb on + strand, within Pf6N2E2_4320 at 5042.494 kb on + strand, within Pf6N2E2_4320 at 5042.494 kb on + strand, within Pf6N2E2_4320 at 5042.494 kb on + strand, within Pf6N2E2_4320 at 5042.494 kb on + strand, within Pf6N2E2_4320 at 5042.495 kb on - strand, within Pf6N2E2_4320 at 5042.495 kb on - strand, within Pf6N2E2_4320 at 5042.495 kb on - strand, within Pf6N2E2_4320 at 5042.495 kb on - strand, within Pf6N2E2_4320 at 5042.495 kb on - strand, within Pf6N2E2_4320 at 5042.495 kb on - strand, within Pf6N2E2_4320 at 5042.509 kb on + strand, within Pf6N2E2_4320 at 5042.509 kb on + strand, within Pf6N2E2_4320 at 5042.509 kb on + strand, within Pf6N2E2_4320 at 5042.509 kb on + strand, within Pf6N2E2_4320 at 5042.510 kb on - strand, within Pf6N2E2_4320 at 5042.510 kb on - strand, within Pf6N2E2_4320 at 5042.510 kb on - strand, within Pf6N2E2_4320 at 5042.510 kb on - strand, within Pf6N2E2_4320 at 5042.582 kb on - strand, within Pf6N2E2_4320 at 5042.582 kb on - strand, within Pf6N2E2_4320
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M remove 5,040,314 - Pf6N2E2_4318 0.69 -2.5 5,040,316 + Pf6N2E2_4318 0.69 -0.0 5,040,410 - Pf6N2E2_4318 0.74 +1.2 5,040,410 - Pf6N2E2_4318 0.74 +0.2 5,040,410 - Pf6N2E2_4318 0.74 -0.3 5,040,413 - Pf6N2E2_4318 0.74 -0.3 5,040,413 - Pf6N2E2_4318 0.74 -0.6 5,040,413 - Pf6N2E2_4318 0.74 +0.7 5,040,478 + Pf6N2E2_4318 0.77 -1.5 5,040,478 + Pf6N2E2_4318 0.77 +0.4 5,040,803 - -1.1 5,040,803 - -0.1 5,040,909 + -2.3 5,040,909 + +0.4 5,040,909 + -0.1 5,040,910 - -0.5 5,040,925 + -0.7 5,041,035 + +0.7 5,041,035 + +1.4 5,041,035 + -0.7 5,041,036 - -0.3 5,041,036 - -0.1 5,041,057 + -0.6 5,041,057 + -2.0 5,041,057 + -1.5 5,041,057 + +0.2 5,041,057 + +0.1 5,041,057 + +1.0 5,041,058 - +1.0 5,041,058 - -1.9 5,041,058 - -1.3 5,041,058 - -3.1 5,041,058 - +0.2 5,041,058 - -0.3 5,041,058 - +2.1 5,041,058 - +1.1 5,041,058 - +0.6 5,041,108 + +1.8 5,041,108 + +1.6 5,041,109 - -1.2 5,041,116 + +1.4 5,041,117 - -1.9 5,041,159 + -1.5 5,041,231 + Pf6N2E2_4319 0.16 -1.5 5,041,232 - Pf6N2E2_4319 0.16 -2.2 5,041,261 + Pf6N2E2_4319 0.23 -0.3 5,041,262 - Pf6N2E2_4319 0.23 -1.1 5,041,322 + Pf6N2E2_4319 0.37 -0.4 5,041,414 + Pf6N2E2_4319 0.58 +0.5 5,041,414 + Pf6N2E2_4319 0.58 +1.2 5,041,414 + Pf6N2E2_4319 0.58 -2.7 5,041,414 + Pf6N2E2_4319 0.58 -0.3 5,041,428 - Pf6N2E2_4319 0.61 -1.5 5,041,428 - Pf6N2E2_4319 0.61 -0.2 5,041,483 + Pf6N2E2_4319 0.74 +1.2 5,041,483 + Pf6N2E2_4319 0.74 +0.9 5,041,605 + -1.5 5,041,606 - -1.7 5,041,606 - -1.4 5,041,606 - +0.9 5,041,619 + +0.3 5,041,619 + +0.8 5,041,619 + -0.8 5,041,620 - +0.9 5,041,625 + -1.8 5,041,625 + +1.2 5,041,625 + -1.8 5,041,625 + +1.8 5,041,625 + +0.6 5,041,625 + -1.2 5,041,625 + -0.3 5,041,625 + +0.6 5,041,626 - +1.9 5,041,626 - +0.1 5,041,626 - +1.7 5,041,626 - -0.1 5,041,626 - -0.6 5,041,626 - -1.3 5,041,626 - -2.1 5,041,626 - -2.0 5,041,670 + +1.2 5,041,671 - +0.2 5,042,283 + Pf6N2E2_4320 0.51 -1.9 5,042,284 - Pf6N2E2_4320 0.51 +0.7 5,042,303 + Pf6N2E2_4320 0.53 -0.5 5,042,425 + Pf6N2E2_4320 0.63 +0.1 5,042,425 + Pf6N2E2_4320 0.63 +1.0 5,042,426 - Pf6N2E2_4320 0.63 +0.1 5,042,494 + Pf6N2E2_4320 0.68 +0.8 5,042,494 + Pf6N2E2_4320 0.68 -0.2 5,042,494 + Pf6N2E2_4320 0.68 -0.5 5,042,494 + Pf6N2E2_4320 0.68 +3.4 5,042,494 + Pf6N2E2_4320 0.68 +1.8 5,042,494 + Pf6N2E2_4320 0.68 -1.3 5,042,495 - Pf6N2E2_4320 0.68 -1.0 5,042,495 - Pf6N2E2_4320 0.68 -0.9 5,042,495 - Pf6N2E2_4320 0.68 -1.0 5,042,495 - Pf6N2E2_4320 0.68 +0.6 5,042,495 - Pf6N2E2_4320 0.68 +0.9 5,042,495 - Pf6N2E2_4320 0.68 +0.8 5,042,509 + Pf6N2E2_4320 0.69 +0.4 5,042,509 + Pf6N2E2_4320 0.69 +0.9 5,042,509 + Pf6N2E2_4320 0.69 +0.3 5,042,509 + Pf6N2E2_4320 0.69 -1.8 5,042,510 - Pf6N2E2_4320 0.69 -1.9 5,042,510 - Pf6N2E2_4320 0.69 +0.0 5,042,510 - Pf6N2E2_4320 0.69 -0.4 5,042,510 - Pf6N2E2_4320 0.69 +0.2 5,042,582 - Pf6N2E2_4320 0.75 -1.5 5,042,582 - Pf6N2E2_4320 0.75 -0.5
Or see this region's nucleotide sequence