Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4319

Experiment: Zinc chloride 0.0000015625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4318 and Pf6N2E2_4319 are separated by 248 nucleotidesPf6N2E2_4319 and Pf6N2E2_4320 are separated by 35 nucleotides Pf6N2E2_4318 - VgrG-3 protein, at 5,038,983 to 5,040,914 _4318 Pf6N2E2_4319 - FIG00960169: hypothetical protein, at 5,041,163 to 5,041,597 _4319 Pf6N2E2_4320 - Rhs family protein, at 5,041,633 to 5,042,898 _4320 Position (kb) 5041 5042Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5040.314 kb on - strand, within Pf6N2E2_4318at 5040.316 kb on + strand, within Pf6N2E2_4318at 5040.410 kb on - strand, within Pf6N2E2_4318at 5040.410 kb on - strand, within Pf6N2E2_4318at 5040.410 kb on - strand, within Pf6N2E2_4318at 5040.413 kb on - strand, within Pf6N2E2_4318at 5040.413 kb on - strand, within Pf6N2E2_4318at 5040.413 kb on - strand, within Pf6N2E2_4318at 5040.478 kb on + strand, within Pf6N2E2_4318at 5040.478 kb on + strand, within Pf6N2E2_4318at 5040.803 kb on - strandat 5040.803 kb on - strandat 5040.909 kb on + strandat 5040.909 kb on + strandat 5040.909 kb on + strandat 5040.910 kb on - strandat 5040.925 kb on + strandat 5041.035 kb on + strandat 5041.035 kb on + strandat 5041.035 kb on + strandat 5041.036 kb on - strandat 5041.036 kb on - strandat 5041.057 kb on + strandat 5041.057 kb on + strandat 5041.057 kb on + strandat 5041.057 kb on + strandat 5041.057 kb on + strandat 5041.057 kb on + strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.058 kb on - strandat 5041.108 kb on + strandat 5041.108 kb on + strandat 5041.109 kb on - strandat 5041.116 kb on + strandat 5041.117 kb on - strandat 5041.159 kb on + strandat 5041.231 kb on + strand, within Pf6N2E2_4319at 5041.232 kb on - strand, within Pf6N2E2_4319at 5041.261 kb on + strand, within Pf6N2E2_4319at 5041.262 kb on - strand, within Pf6N2E2_4319at 5041.322 kb on + strand, within Pf6N2E2_4319at 5041.414 kb on + strand, within Pf6N2E2_4319at 5041.414 kb on + strand, within Pf6N2E2_4319at 5041.414 kb on + strand, within Pf6N2E2_4319at 5041.414 kb on + strand, within Pf6N2E2_4319at 5041.428 kb on - strand, within Pf6N2E2_4319at 5041.428 kb on - strand, within Pf6N2E2_4319at 5041.483 kb on + strand, within Pf6N2E2_4319at 5041.483 kb on + strand, within Pf6N2E2_4319at 5041.605 kb on + strandat 5041.606 kb on - strandat 5041.606 kb on - strandat 5041.606 kb on - strandat 5041.619 kb on + strandat 5041.619 kb on + strandat 5041.619 kb on + strandat 5041.620 kb on - strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.625 kb on + strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.626 kb on - strandat 5041.670 kb on + strandat 5041.671 kb on - strandat 5042.283 kb on + strand, within Pf6N2E2_4320at 5042.284 kb on - strand, within Pf6N2E2_4320at 5042.303 kb on + strand, within Pf6N2E2_4320at 5042.425 kb on + strand, within Pf6N2E2_4320at 5042.425 kb on + strand, within Pf6N2E2_4320at 5042.426 kb on - strand, within Pf6N2E2_4320at 5042.494 kb on + strand, within Pf6N2E2_4320at 5042.494 kb on + strand, within Pf6N2E2_4320at 5042.494 kb on + strand, within Pf6N2E2_4320at 5042.494 kb on + strand, within Pf6N2E2_4320at 5042.494 kb on + strand, within Pf6N2E2_4320at 5042.494 kb on + strand, within Pf6N2E2_4320at 5042.495 kb on - strand, within Pf6N2E2_4320at 5042.495 kb on - strand, within Pf6N2E2_4320at 5042.495 kb on - strand, within Pf6N2E2_4320at 5042.495 kb on - strand, within Pf6N2E2_4320at 5042.495 kb on - strand, within Pf6N2E2_4320at 5042.495 kb on - strand, within Pf6N2E2_4320at 5042.509 kb on + strand, within Pf6N2E2_4320at 5042.509 kb on + strand, within Pf6N2E2_4320at 5042.509 kb on + strand, within Pf6N2E2_4320at 5042.509 kb on + strand, within Pf6N2E2_4320at 5042.510 kb on - strand, within Pf6N2E2_4320at 5042.510 kb on - strand, within Pf6N2E2_4320at 5042.510 kb on - strand, within Pf6N2E2_4320at 5042.510 kb on - strand, within Pf6N2E2_4320at 5042.582 kb on - strand, within Pf6N2E2_4320at 5042.582 kb on - strand, within Pf6N2E2_4320

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc chloride 0.0000015625 M
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5,040,314 - Pf6N2E2_4318 0.69 -2.5
5,040,316 + Pf6N2E2_4318 0.69 -0.0
5,040,410 - Pf6N2E2_4318 0.74 +1.2
5,040,410 - Pf6N2E2_4318 0.74 +0.2
5,040,410 - Pf6N2E2_4318 0.74 -0.3
5,040,413 - Pf6N2E2_4318 0.74 -0.3
5,040,413 - Pf6N2E2_4318 0.74 -0.6
5,040,413 - Pf6N2E2_4318 0.74 +0.7
5,040,478 + Pf6N2E2_4318 0.77 -1.5
5,040,478 + Pf6N2E2_4318 0.77 +0.4
5,040,803 - -1.1
5,040,803 - -0.1
5,040,909 + -2.3
5,040,909 + +0.4
5,040,909 + -0.1
5,040,910 - -0.5
5,040,925 + -0.7
5,041,035 + +0.7
5,041,035 + +1.4
5,041,035 + -0.7
5,041,036 - -0.3
5,041,036 - -0.1
5,041,057 + -0.6
5,041,057 + -2.0
5,041,057 + -1.5
5,041,057 + +0.2
5,041,057 + +0.1
5,041,057 + +1.0
5,041,058 - +1.0
5,041,058 - -1.9
5,041,058 - -1.3
5,041,058 - -3.1
5,041,058 - +0.2
5,041,058 - -0.3
5,041,058 - +2.1
5,041,058 - +1.1
5,041,058 - +0.6
5,041,108 + +1.8
5,041,108 + +1.6
5,041,109 - -1.2
5,041,116 + +1.4
5,041,117 - -1.9
5,041,159 + -1.5
5,041,231 + Pf6N2E2_4319 0.16 -1.5
5,041,232 - Pf6N2E2_4319 0.16 -2.2
5,041,261 + Pf6N2E2_4319 0.23 -0.3
5,041,262 - Pf6N2E2_4319 0.23 -1.1
5,041,322 + Pf6N2E2_4319 0.37 -0.4
5,041,414 + Pf6N2E2_4319 0.58 +0.5
5,041,414 + Pf6N2E2_4319 0.58 +1.2
5,041,414 + Pf6N2E2_4319 0.58 -2.7
5,041,414 + Pf6N2E2_4319 0.58 -0.3
5,041,428 - Pf6N2E2_4319 0.61 -1.5
5,041,428 - Pf6N2E2_4319 0.61 -0.2
5,041,483 + Pf6N2E2_4319 0.74 +1.2
5,041,483 + Pf6N2E2_4319 0.74 +0.9
5,041,605 + -1.5
5,041,606 - -1.7
5,041,606 - -1.4
5,041,606 - +0.9
5,041,619 + +0.3
5,041,619 + +0.8
5,041,619 + -0.8
5,041,620 - +0.9
5,041,625 + -1.8
5,041,625 + +1.2
5,041,625 + -1.8
5,041,625 + +1.8
5,041,625 + +0.6
5,041,625 + -1.2
5,041,625 + -0.3
5,041,625 + +0.6
5,041,626 - +1.9
5,041,626 - +0.1
5,041,626 - +1.7
5,041,626 - -0.1
5,041,626 - -0.6
5,041,626 - -1.3
5,041,626 - -2.1
5,041,626 - -2.0
5,041,670 + +1.2
5,041,671 - +0.2
5,042,283 + Pf6N2E2_4320 0.51 -1.9
5,042,284 - Pf6N2E2_4320 0.51 +0.7
5,042,303 + Pf6N2E2_4320 0.53 -0.5
5,042,425 + Pf6N2E2_4320 0.63 +0.1
5,042,425 + Pf6N2E2_4320 0.63 +1.0
5,042,426 - Pf6N2E2_4320 0.63 +0.1
5,042,494 + Pf6N2E2_4320 0.68 +0.8
5,042,494 + Pf6N2E2_4320 0.68 -0.2
5,042,494 + Pf6N2E2_4320 0.68 -0.5
5,042,494 + Pf6N2E2_4320 0.68 +3.4
5,042,494 + Pf6N2E2_4320 0.68 +1.8
5,042,494 + Pf6N2E2_4320 0.68 -1.3
5,042,495 - Pf6N2E2_4320 0.68 -1.0
5,042,495 - Pf6N2E2_4320 0.68 -0.9
5,042,495 - Pf6N2E2_4320 0.68 -1.0
5,042,495 - Pf6N2E2_4320 0.68 +0.6
5,042,495 - Pf6N2E2_4320 0.68 +0.9
5,042,495 - Pf6N2E2_4320 0.68 +0.8
5,042,509 + Pf6N2E2_4320 0.69 +0.4
5,042,509 + Pf6N2E2_4320 0.69 +0.9
5,042,509 + Pf6N2E2_4320 0.69 +0.3
5,042,509 + Pf6N2E2_4320 0.69 -1.8
5,042,510 - Pf6N2E2_4320 0.69 -1.9
5,042,510 - Pf6N2E2_4320 0.69 +0.0
5,042,510 - Pf6N2E2_4320 0.69 -0.4
5,042,510 - Pf6N2E2_4320 0.69 +0.2
5,042,582 - Pf6N2E2_4320 0.75 -1.5
5,042,582 - Pf6N2E2_4320 0.75 -0.5

Or see this region's nucleotide sequence