Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0980 and ssrA are separated by 63 nucleotides ssrA and Synpcc7942_0981 are separated by 69 nucleotides Synpcc7942_0981 and Synpcc7942_0982 are separated by 58 nucleotides Synpcc7942_0982 and deoC are separated by 19 nucleotides
Synpcc7942_0980: Synpcc7942_0980 - hypothetical protein, at 988,653 to 989,276
_0980
Synpcc7942_R0017: ssrA - no description, at 989,340 to 989,730
ssrA
Synpcc7942_0981: Synpcc7942_0981 - hypothetical protein, at 989,800 to 991,494
_0981
Synpcc7942_0982: Synpcc7942_0982 - hypothetical protein, at 991,553 to 992,167
_0982
Synpcc7942_0983: deoC - deoxyribose-phosphate aldolase, at 992,187 to 992,873
deoC
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 989.058 kb on - strand, within Synpcc7942_0980 at 989.095 kb on - strand, within Synpcc7942_0980 at 989.098 kb on + strand, within Synpcc7942_0980 at 989.098 kb on + strand, within Synpcc7942_0980 at 989.111 kb on - strand, within Synpcc7942_0980 at 989.122 kb on + strand, within Synpcc7942_0980 at 989.132 kb on + strand, within Synpcc7942_0980 at 989.135 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.140 kb on - strand, within Synpcc7942_0980 at 989.146 kb on + strand, within Synpcc7942_0980 at 989.146 kb on + strand, within Synpcc7942_0980 at 989.154 kb on - strand, within Synpcc7942_0980 at 989.154 kb on - strand, within Synpcc7942_0980 at 989.158 kb on - strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.168 kb on + strand, within Synpcc7942_0980 at 989.171 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.176 kb on - strand, within Synpcc7942_0980 at 989.184 kb on + strand, within Synpcc7942_0980 at 989.186 kb on - strand, within Synpcc7942_0980 at 989.195 kb on - strand, within Synpcc7942_0980 at 989.202 kb on - strand, within Synpcc7942_0980 at 989.204 kb on + strand, within Synpcc7942_0980 at 989.209 kb on + strand, within Synpcc7942_0980 at 989.212 kb on - strand, within Synpcc7942_0980 at 989.222 kb on - strand at 989.222 kb on - strand at 989.222 kb on - strand at 989.224 kb on + strand at 989.249 kb on + strand at 989.281 kb on - strand at 989.742 kb on + strand at 989.756 kb on + strand at 989.762 kb on - strand at 989.763 kb on - strand at 989.774 kb on - strand at 989.837 kb on + strand at 989.965 kb on + strand at 989.970 kb on + strand, within Synpcc7942_0981 at 989.970 kb on + strand, within Synpcc7942_0981 at 989.982 kb on - strand, within Synpcc7942_0981 at 990.077 kb on - strand, within Synpcc7942_0981 at 990.125 kb on - strand, within Synpcc7942_0981 at 990.137 kb on - strand, within Synpcc7942_0981 at 990.205 kb on + strand, within Synpcc7942_0981 at 990.211 kb on - strand, within Synpcc7942_0981 at 990.213 kb on - strand, within Synpcc7942_0981 at 990.235 kb on - strand, within Synpcc7942_0981 at 990.244 kb on + strand, within Synpcc7942_0981 at 990.263 kb on - strand, within Synpcc7942_0981 at 990.263 kb on - strand, within Synpcc7942_0981 at 990.288 kb on + strand, within Synpcc7942_0981 at 990.296 kb on - strand, within Synpcc7942_0981 at 990.296 kb on - strand, within Synpcc7942_0981 at 990.299 kb on + strand at 990.331 kb on + strand, within Synpcc7942_0981 at 990.331 kb on + strand, within Synpcc7942_0981 at 990.339 kb on - strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.341 kb on + strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.349 kb on - strand, within Synpcc7942_0981 at 990.356 kb on + strand, within Synpcc7942_0981 at 990.356 kb on + strand, within Synpcc7942_0981 at 990.361 kb on + strand at 990.364 kb on - strand, within Synpcc7942_0981 at 990.364 kb on - strand, within Synpcc7942_0981 at 990.364 kb on - strand, within Synpcc7942_0981 at 990.364 kb on - strand, within Synpcc7942_0981 at 990.366 kb on + strand, within Synpcc7942_0981 at 990.369 kb on - strand, within Synpcc7942_0981 at 990.380 kb on + strand, within Synpcc7942_0981 at 990.427 kb on + strand, within Synpcc7942_0981 at 990.443 kb on + strand, within Synpcc7942_0981 at 990.471 kb on + strand, within Synpcc7942_0981 at 990.478 kb on + strand, within Synpcc7942_0981 at 990.479 kb on - strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.541 kb on + strand, within Synpcc7942_0981 at 990.549 kb on - strand, within Synpcc7942_0981 at 990.549 kb on - strand, within Synpcc7942_0981 at 990.583 kb on - strand, within Synpcc7942_0981 at 990.630 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.684 kb on + strand, within Synpcc7942_0981 at 990.692 kb on + strand, within Synpcc7942_0981 at 990.697 kb on + strand, within Synpcc7942_0981 at 990.759 kb on - strand, within Synpcc7942_0981 at 990.766 kb on - strand, within Synpcc7942_0981 at 990.782 kb on + strand, within Synpcc7942_0981 at 990.819 kb on + strand, within Synpcc7942_0981 at 990.830 kb on - strand, within Synpcc7942_0981 at 990.856 kb on + strand, within Synpcc7942_0981 at 990.864 kb on - strand, within Synpcc7942_0981 at 990.874 kb on + strand at 990.899 kb on - strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.930 kb on + strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.978 kb on - strand, within Synpcc7942_0981 at 991.001 kb on - strand, within Synpcc7942_0981 at 991.022 kb on - strand, within Synpcc7942_0981 at 991.027 kb on + strand, within Synpcc7942_0981 at 991.037 kb on + strand, within Synpcc7942_0981 at 991.105 kb on - strand, within Synpcc7942_0981 at 991.181 kb on - strand, within Synpcc7942_0981 at 991.212 kb on - strand, within Synpcc7942_0981 at 991.236 kb on + strand, within Synpcc7942_0981 at 991.244 kb on - strand, within Synpcc7942_0981 at 991.249 kb on + strand, within Synpcc7942_0981 at 991.318 kb on + strand, within Synpcc7942_0981 at 991.341 kb on - strand at 991.348 kb on - strand at 991.348 kb on - strand at 991.350 kb on - strand at 991.350 kb on - strand at 991.420 kb on - strand at 991.432 kb on + strand at 991.432 kb on + strand at 991.440 kb on - strand at 991.465 kb on - strand at 991.478 kb on + strand at 991.478 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.507 kb on - strand at 991.509 kb on + strand at 991.526 kb on + strand at 991.534 kb on - strand at 991.536 kb on - strand at 991.544 kb on - strand at 991.548 kb on + strand at 991.548 kb on + strand at 991.554 kb on - strand at 991.555 kb on + strand at 991.556 kb on - strand at 991.556 kb on - strand at 991.567 kb on + strand at 991.580 kb on + strand at 991.584 kb on + strand at 991.657 kb on + strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.684 kb on - strand, within Synpcc7942_0982 at 991.693 kb on + strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.778 kb on + strand, within Synpcc7942_0982 at 991.786 kb on - strand, within Synpcc7942_0982 at 991.806 kb on - strand, within Synpcc7942_0982 at 991.904 kb on - strand, within Synpcc7942_0982 at 991.927 kb on - strand, within Synpcc7942_0982 at 991.931 kb on + strand, within Synpcc7942_0982 at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.191 kb on - strand at 992.213 kb on - strand at 992.219 kb on + strand at 992.257 kb on + strand, within deoC at 992.265 kb on - strand, within deoC at 992.320 kb on - strand, within deoC at 992.325 kb on - strand, within deoC at 992.343 kb on - strand, within deoC at 992.353 kb on + strand, within deoC at 992.368 kb on + strand, within deoC at 992.370 kb on + strand, within deoC at 992.376 kb on - strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.468 kb on + strand, within deoC at 992.492 kb on - strand, within deoC at 992.492 kb on - strand, within deoC
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 989,058 - Synpcc7942_0980 0.65 -0.5 989,095 - Synpcc7942_0980 0.71 -0.6 989,098 + Synpcc7942_0980 0.71 -0.2 989,098 + Synpcc7942_0980 0.71 -1.3 989,111 - Synpcc7942_0980 0.73 +1.2 989,122 + Synpcc7942_0980 0.75 +0.0 989,132 + Synpcc7942_0980 0.77 +1.1 989,135 - Synpcc7942_0980 0.77 +0.2 989,140 - +0.5 989,140 - Synpcc7942_0980 0.78 +0.2 989,140 - Synpcc7942_0980 0.78 +0.3 989,140 - Synpcc7942_0980 0.78 +0.6 989,140 - Synpcc7942_0980 0.78 -0.1 989,146 + Synpcc7942_0980 0.79 -0.3 989,146 + Synpcc7942_0980 0.79 -0.1 989,154 - Synpcc7942_0980 0.80 -0.6 989,154 - Synpcc7942_0980 0.80 +0.3 989,158 - Synpcc7942_0980 0.81 +2.4 989,168 + Synpcc7942_0980 0.83 +0.4 989,168 + Synpcc7942_0980 0.83 -1.0 989,168 + Synpcc7942_0980 0.83 -1.6 989,168 + Synpcc7942_0980 0.83 -0.2 989,168 + Synpcc7942_0980 0.83 -0.5 989,168 + Synpcc7942_0980 0.83 +1.6 989,168 + Synpcc7942_0980 0.83 -0.3 989,171 - Synpcc7942_0980 0.83 +0.6 989,176 - Synpcc7942_0980 0.84 -0.5 989,176 - Synpcc7942_0980 0.84 +1.4 989,176 - Synpcc7942_0980 0.84 +0.3 989,176 - Synpcc7942_0980 0.84 -0.2 989,176 - Synpcc7942_0980 0.84 +0.6 989,184 + Synpcc7942_0980 0.85 -2.0 989,186 - Synpcc7942_0980 0.85 -0.1 989,195 - Synpcc7942_0980 0.87 -0.5 989,202 - Synpcc7942_0980 0.88 -1.6 989,204 + Synpcc7942_0980 0.88 -0.4 989,209 + Synpcc7942_0980 0.89 -1.1 989,212 - Synpcc7942_0980 0.90 -1.3 989,222 - +0.1 989,222 - +0.5 989,222 - -0.3 989,224 + +0.3 989,249 + +0.7 989,281 - +1.5 989,742 + -1.1 989,756 + +0.3 989,762 - -0.9 989,763 - +0.5 989,774 - +0.1 989,837 + -1.9 989,965 + -1.3 989,970 + Synpcc7942_0981 0.10 -0.7 989,970 + Synpcc7942_0981 0.10 -3.6 989,982 - Synpcc7942_0981 0.11 +0.1 990,077 - Synpcc7942_0981 0.16 -2.8 990,125 - Synpcc7942_0981 0.19 +0.5 990,137 - Synpcc7942_0981 0.20 -2.0 990,205 + Synpcc7942_0981 0.24 -1.4 990,211 - Synpcc7942_0981 0.24 -3.4 990,213 - Synpcc7942_0981 0.24 -0.9 990,235 - Synpcc7942_0981 0.26 -2.4 990,244 + Synpcc7942_0981 0.26 -1.4 990,263 - Synpcc7942_0981 0.27 -3.1 990,263 - Synpcc7942_0981 0.27 -0.2 990,288 + Synpcc7942_0981 0.29 -1.1 990,296 - Synpcc7942_0981 0.29 -2.9 990,296 - Synpcc7942_0981 0.29 -0.5 990,299 + -0.7 990,331 + Synpcc7942_0981 0.31 -1.9 990,331 + Synpcc7942_0981 0.31 -1.8 990,339 - Synpcc7942_0981 0.32 -2.6 990,341 + Synpcc7942_0981 0.32 -3.6 990,341 + Synpcc7942_0981 0.32 -3.7 990,341 + Synpcc7942_0981 0.32 -2.1 990,341 + Synpcc7942_0981 0.32 -1.5 990,349 - Synpcc7942_0981 0.32 -1.7 990,349 - Synpcc7942_0981 0.32 -0.5 990,349 - Synpcc7942_0981 0.32 -3.5 990,349 - Synpcc7942_0981 0.32 -1.8 990,349 - Synpcc7942_0981 0.32 -0.8 990,349 - Synpcc7942_0981 0.32 -2.7 990,349 - Synpcc7942_0981 0.32 -1.6 990,349 - Synpcc7942_0981 0.32 -2.5 990,356 + Synpcc7942_0981 0.33 -1.8 990,356 + Synpcc7942_0981 0.33 -2.6 990,361 + -0.9 990,364 - Synpcc7942_0981 0.33 -2.3 990,364 - Synpcc7942_0981 0.33 -1.7 990,364 - Synpcc7942_0981 0.33 -2.7 990,364 - Synpcc7942_0981 0.33 -1.0 990,366 + Synpcc7942_0981 0.33 -0.3 990,369 - Synpcc7942_0981 0.34 -2.5 990,380 + Synpcc7942_0981 0.34 +0.1 990,427 + Synpcc7942_0981 0.37 -1.9 990,443 + Synpcc7942_0981 0.38 -2.0 990,471 + Synpcc7942_0981 0.40 +0.5 990,478 + Synpcc7942_0981 0.40 -1.6 990,479 - Synpcc7942_0981 0.40 -1.2 990,541 + Synpcc7942_0981 0.44 -1.7 990,541 + Synpcc7942_0981 0.44 -1.7 990,541 + Synpcc7942_0981 0.44 -1.3 990,541 + Synpcc7942_0981 0.44 -1.6 990,549 - Synpcc7942_0981 0.44 -3.1 990,549 - Synpcc7942_0981 0.44 -3.2 990,583 - Synpcc7942_0981 0.46 +0.2 990,630 + Synpcc7942_0981 0.49 -1.5 990,632 + Synpcc7942_0981 0.49 -3.3 990,632 + Synpcc7942_0981 0.49 -2.7 990,684 + Synpcc7942_0981 0.52 -1.0 990,692 + Synpcc7942_0981 0.53 -3.4 990,697 + Synpcc7942_0981 0.53 -2.2 990,759 - Synpcc7942_0981 0.57 -1.1 990,766 - Synpcc7942_0981 0.57 -2.1 990,782 + Synpcc7942_0981 0.58 -0.3 990,819 + Synpcc7942_0981 0.60 +1.9 990,830 - Synpcc7942_0981 0.61 -2.0 990,856 + Synpcc7942_0981 0.62 -1.0 990,864 - Synpcc7942_0981 0.63 -3.1 990,874 + -1.1 990,899 - Synpcc7942_0981 0.65 -1.4 990,914 + Synpcc7942_0981 0.66 -0.7 990,914 + Synpcc7942_0981 0.66 -1.9 990,914 + Synpcc7942_0981 0.66 -0.5 990,922 - Synpcc7942_0981 0.66 -1.6 990,922 - Synpcc7942_0981 0.66 -1.8 990,922 - Synpcc7942_0981 0.66 -2.2 990,922 - Synpcc7942_0981 0.66 -1.2 990,922 - Synpcc7942_0981 0.66 -1.9 990,922 - Synpcc7942_0981 0.66 -4.4 990,930 + Synpcc7942_0981 0.67 -1.5 990,967 - Synpcc7942_0981 0.69 -2.2 990,967 - Synpcc7942_0981 0.69 -4.6 990,978 - Synpcc7942_0981 0.69 -0.1 991,001 - Synpcc7942_0981 0.71 -1.7 991,022 - Synpcc7942_0981 0.72 -1.4 991,027 + Synpcc7942_0981 0.72 -1.4 991,037 + Synpcc7942_0981 0.73 -1.6 991,105 - Synpcc7942_0981 0.77 -1.0 991,181 - Synpcc7942_0981 0.81 -1.7 991,212 - Synpcc7942_0981 0.83 -0.9 991,236 + Synpcc7942_0981 0.85 -0.7 991,244 - Synpcc7942_0981 0.85 -0.6 991,249 + Synpcc7942_0981 0.85 -1.3 991,318 + Synpcc7942_0981 0.90 -1.4 991,341 - -1.8 991,348 - -1.1 991,348 - -2.3 991,350 - -3.1 991,350 - -2.5 991,420 - -1.7 991,432 + -3.1 991,432 + -3.2 991,440 - -0.7 991,465 - +0.4 991,478 + -0.4 991,478 + -0.3 991,499 + -0.8 991,499 + -3.2 991,499 + -0.6 991,507 - -1.8 991,509 + -1.7 991,526 + -1.0 991,534 - -1.3 991,536 - -1.3 991,544 - -2.0 991,548 + -0.5 991,548 + +0.1 991,554 - -0.2 991,555 + -0.0 991,556 - -0.0 991,556 - -0.5 991,567 + +0.5 991,580 + -0.3 991,584 + -0.0 991,657 + Synpcc7942_0982 0.17 -0.3 991,660 - Synpcc7942_0982 0.17 -0.6 991,660 - Synpcc7942_0982 0.17 -1.6 991,684 - Synpcc7942_0982 0.21 -0.3 991,693 + Synpcc7942_0982 0.23 +0.4 991,706 - Synpcc7942_0982 0.25 +0.6 991,706 - Synpcc7942_0982 0.25 +1.3 991,706 - Synpcc7942_0982 0.25 -1.0 991,778 + Synpcc7942_0982 0.37 -0.7 991,786 - Synpcc7942_0982 0.38 -1.8 991,806 - Synpcc7942_0982 0.41 -0.1 991,904 - Synpcc7942_0982 0.57 -2.6 991,927 - Synpcc7942_0982 0.61 -1.4 991,931 + Synpcc7942_0982 0.61 -0.0 992,183 + -0.1 992,183 + -0.1 992,183 + +0.7 992,183 + +0.2 992,191 - -0.4 992,213 - +0.1 992,219 + -0.3 992,257 + deoC Synpcc7942_0983 0.10 -1.4 992,265 - deoC Synpcc7942_0983 0.11 -1.3 992,320 - deoC Synpcc7942_0983 0.19 +0.8 992,325 - deoC Synpcc7942_0983 0.20 +0.1 992,343 - deoC Synpcc7942_0983 0.23 -0.4 992,353 + deoC Synpcc7942_0983 0.24 -1.3 992,368 + deoC Synpcc7942_0983 0.26 -0.1 992,370 + deoC Synpcc7942_0983 0.27 +0.1 992,376 - deoC Synpcc7942_0983 0.28 +0.7 992,426 + deoC Synpcc7942_0983 0.35 +0.6 992,426 + deoC Synpcc7942_0983 0.35 +0.1 992,426 + deoC Synpcc7942_0983 0.35 -0.3 992,434 - deoC Synpcc7942_0983 0.36 -0.1 992,434 - deoC Synpcc7942_0983 0.36 +1.4 992,434 - deoC Synpcc7942_0983 0.36 -0.5 992,434 - deoC Synpcc7942_0983 0.36 +0.3 992,434 - deoC Synpcc7942_0983 0.36 -0.8 992,434 - deoC Synpcc7942_0983 0.36 +0.5 992,468 + deoC Synpcc7942_0983 0.41 +0.3 992,492 - deoC Synpcc7942_0983 0.44 +1.4 992,492 - deoC Synpcc7942_0983 0.44 +0.4
Or see this region's nucleotide sequence