Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt scpB and Synpcc7942_0427 are separated by 16 nucleotides Synpcc7942_0427 and leuA are separated by 30 nucleotides leuA and Synpcc7942_0429 are separated by 70 nucleotides Synpcc7942_0429 and dxs are separated by 161 nucleotides
Synpcc7942_0426: scpB - condensin subunit ScpB, at 415,535 to 416,086
scpB
Synpcc7942_0427: Synpcc7942_0427 - ATPase, at 416,103 to 416,951
_0427
Synpcc7942_0428: leuA - putative alpha-isopropylmalate/homocitrate synthase family transferase, at 416,982 to 418,610
leuA
Synpcc7942_0429: Synpcc7942_0429 - hypothetical protein, at 418,681 to 419,220
_0429
Synpcc7942_0430: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 419,382 to 421,292
dxs
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.995 kb on + strand, within scpB at 416.003 kb on - strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.045 kb on - strand at 416.045 kb on - strand at 416.051 kb on - strand at 416.082 kb on - strand at 416.102 kb on - strand at 416.142 kb on - strand at 416.171 kb on - strand at 416.171 kb on - strand at 416.176 kb on - strand at 416.176 kb on - strand at 416.199 kb on + strand, within Synpcc7942_0427 at 416.201 kb on + strand, within Synpcc7942_0427 at 416.235 kb on + strand, within Synpcc7942_0427 at 416.237 kb on - strand, within Synpcc7942_0427 at 416.261 kb on + strand, within Synpcc7942_0427 at 416.262 kb on + strand, within Synpcc7942_0427 at 416.270 kb on - strand, within Synpcc7942_0427 at 416.326 kb on - strand, within Synpcc7942_0427 at 416.374 kb on - strand, within Synpcc7942_0427 at 416.376 kb on - strand, within Synpcc7942_0427 at 416.385 kb on + strand, within Synpcc7942_0427 at 416.483 kb on + strand, within Synpcc7942_0427 at 416.517 kb on + strand, within Synpcc7942_0427 at 416.590 kb on - strand, within Synpcc7942_0427 at 416.657 kb on + strand, within Synpcc7942_0427 at 416.708 kb on + strand, within Synpcc7942_0427 at 416.753 kb on + strand, within Synpcc7942_0427 at 416.760 kb on + strand, within Synpcc7942_0427 at 416.788 kb on + strand, within Synpcc7942_0427 at 416.793 kb on + strand, within Synpcc7942_0427 at 416.793 kb on + strand, within Synpcc7942_0427 at 416.798 kb on + strand, within Synpcc7942_0427 at 416.798 kb on + strand, within Synpcc7942_0427 at 416.798 kb on + strand, within Synpcc7942_0427 at 416.801 kb on - strand, within Synpcc7942_0427 at 416.806 kb on - strand, within Synpcc7942_0427 at 416.810 kb on + strand, within Synpcc7942_0427 at 416.859 kb on - strand, within Synpcc7942_0427 at 416.876 kb on + strand at 416.884 kb on - strand at 416.947 kb on + strand at 416.965 kb on - strand at 417.189 kb on - strand, within leuA at 417.218 kb on + strand, within leuA at 417.489 kb on + strand, within leuA at 417.533 kb on + strand, within leuA at 417.997 kb on - strand, within leuA at 418.095 kb on - strand, within leuA at 418.166 kb on - strand, within leuA at 418.439 kb on + strand, within leuA at 418.623 kb on + strand at 418.636 kb on + strand at 418.647 kb on + strand at 418.678 kb on + strand at 418.686 kb on - strand at 418.745 kb on - strand, within Synpcc7942_0429 at 418.747 kb on - strand, within Synpcc7942_0429 at 418.747 kb on - strand, within Synpcc7942_0429 at 418.764 kb on - strand, within Synpcc7942_0429 at 418.810 kb on + strand, within Synpcc7942_0429 at 418.818 kb on - strand, within Synpcc7942_0429 at 418.833 kb on + strand, within Synpcc7942_0429 at 418.863 kb on + strand, within Synpcc7942_0429 at 418.863 kb on + strand, within Synpcc7942_0429 at 418.870 kb on + strand, within Synpcc7942_0429 at 418.870 kb on - strand, within Synpcc7942_0429 at 418.901 kb on + strand, within Synpcc7942_0429 at 418.911 kb on + strand, within Synpcc7942_0429 at 418.948 kb on + strand, within Synpcc7942_0429 at 418.949 kb on + strand, within Synpcc7942_0429 at 419.001 kb on + strand, within Synpcc7942_0429 at 419.022 kb on - strand, within Synpcc7942_0429 at 419.027 kb on - strand, within Synpcc7942_0429 at 419.078 kb on + strand, within Synpcc7942_0429 at 419.092 kb on - strand, within Synpcc7942_0429 at 419.092 kb on - strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.142 kb on + strand, within Synpcc7942_0429 at 419.156 kb on + strand, within Synpcc7942_0429 at 419.158 kb on - strand, within Synpcc7942_0429 at 419.160 kb on + strand, within Synpcc7942_0429 at 419.160 kb on - strand, within Synpcc7942_0429 at 419.209 kb on - strand at 419.235 kb on + strand at 419.280 kb on + strand at 419.300 kb on + strand at 419.300 kb on + strand at 419.328 kb on + strand at 419.330 kb on + strand at 419.332 kb on - strand at 419.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 415,995 + scpB Synpcc7942_0426 0.83 -0.4 416,003 - scpB Synpcc7942_0426 0.85 -1.1 416,023 + scpB Synpcc7942_0426 0.88 -1.9 416,023 + scpB Synpcc7942_0426 0.88 -0.9 416,023 + scpB Synpcc7942_0426 0.88 -1.0 416,023 + scpB Synpcc7942_0426 0.88 +0.1 416,023 + scpB Synpcc7942_0426 0.88 -0.1 416,023 + scpB Synpcc7942_0426 0.88 -1.2 416,031 - -1.3 416,031 - -1.0 416,031 - -0.9 416,031 - -0.8 416,031 - -0.9 416,031 - +0.5 416,031 - +0.8 416,031 - -2.2 416,045 - -0.2 416,045 - -2.2 416,051 - +0.4 416,082 - -1.0 416,102 - -0.7 416,142 - -0.1 416,171 - -0.5 416,171 - -0.8 416,176 - +0.4 416,176 - -1.1 416,199 + Synpcc7942_0427 0.11 +0.3 416,201 + Synpcc7942_0427 0.12 +0.7 416,235 + Synpcc7942_0427 0.16 -1.1 416,237 - Synpcc7942_0427 0.16 -0.0 416,261 + Synpcc7942_0427 0.19 -0.7 416,262 + Synpcc7942_0427 0.19 +0.6 416,270 - Synpcc7942_0427 0.20 -0.8 416,326 - Synpcc7942_0427 0.26 -1.8 416,374 - Synpcc7942_0427 0.32 +0.0 416,376 - Synpcc7942_0427 0.32 -1.5 416,385 + Synpcc7942_0427 0.33 +0.2 416,483 + Synpcc7942_0427 0.45 +0.1 416,517 + Synpcc7942_0427 0.49 +0.0 416,590 - Synpcc7942_0427 0.57 +0.1 416,657 + Synpcc7942_0427 0.65 -1.0 416,708 + Synpcc7942_0427 0.71 -0.3 416,753 + Synpcc7942_0427 0.77 -0.9 416,760 + Synpcc7942_0427 0.77 +2.1 416,788 + Synpcc7942_0427 0.81 -0.1 416,793 + Synpcc7942_0427 0.81 -0.4 416,793 + Synpcc7942_0427 0.81 -1.9 416,798 + Synpcc7942_0427 0.82 -0.6 416,798 + Synpcc7942_0427 0.82 -0.5 416,798 + Synpcc7942_0427 0.82 -0.2 416,801 - Synpcc7942_0427 0.82 +0.5 416,806 - Synpcc7942_0427 0.83 +0.5 416,810 + Synpcc7942_0427 0.83 -1.2 416,859 - Synpcc7942_0427 0.89 -0.6 416,876 + +2.1 416,884 - -0.4 416,947 + -0.2 416,965 - -0.3 417,189 - leuA Synpcc7942_0428 0.13 -0.6 417,218 + leuA Synpcc7942_0428 0.14 -1.1 417,489 + leuA Synpcc7942_0428 0.31 -2.3 417,533 + leuA Synpcc7942_0428 0.34 -0.7 417,997 - leuA Synpcc7942_0428 0.62 -0.4 418,095 - leuA Synpcc7942_0428 0.68 -1.9 418,166 - leuA Synpcc7942_0428 0.73 -1.1 418,439 + leuA Synpcc7942_0428 0.89 -0.6 418,623 + +0.5 418,636 + +0.3 418,647 + +0.1 418,678 + +0.3 418,686 - -0.4 418,745 - Synpcc7942_0429 0.12 +1.7 418,747 - Synpcc7942_0429 0.12 +1.2 418,747 - Synpcc7942_0429 0.12 -0.8 418,764 - Synpcc7942_0429 0.15 -0.2 418,810 + Synpcc7942_0429 0.24 +0.5 418,818 - Synpcc7942_0429 0.25 +0.3 418,833 + Synpcc7942_0429 0.28 +0.7 418,863 + Synpcc7942_0429 0.34 +0.3 418,863 + Synpcc7942_0429 0.34 -0.7 418,870 + Synpcc7942_0429 0.35 +0.1 418,870 - Synpcc7942_0429 0.35 -0.2 418,901 + Synpcc7942_0429 0.41 -0.8 418,911 + Synpcc7942_0429 0.43 +1.5 418,948 + Synpcc7942_0429 0.49 -0.2 418,949 + Synpcc7942_0429 0.50 +0.2 419,001 + Synpcc7942_0429 0.59 +0.2 419,022 - Synpcc7942_0429 0.63 +0.2 419,027 - Synpcc7942_0429 0.64 +1.0 419,078 + Synpcc7942_0429 0.74 +0.9 419,092 - Synpcc7942_0429 0.76 +0.4 419,092 - Synpcc7942_0429 0.76 +0.3 419,094 + Synpcc7942_0429 0.76 +0.1 419,094 + Synpcc7942_0429 0.76 +0.7 419,094 + Synpcc7942_0429 0.76 +0.8 419,094 + Synpcc7942_0429 0.76 -1.1 419,102 - Synpcc7942_0429 0.78 +0.3 419,102 - Synpcc7942_0429 0.78 -0.1 419,102 - Synpcc7942_0429 0.78 +0.1 419,142 + Synpcc7942_0429 0.85 -1.4 419,156 + Synpcc7942_0429 0.88 +1.0 419,158 - Synpcc7942_0429 0.88 +0.4 419,160 + Synpcc7942_0429 0.89 -0.5 419,160 - Synpcc7942_0429 0.89 -2.9 419,209 - +1.1 419,235 + +0.2 419,280 + +0.2 419,300 + +1.0 419,300 + -0.1 419,328 + +0.6 419,330 + -2.4 419,332 - -1.7 419,384 - -0.4
Or see this region's nucleotide sequence