Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4531

Experiment: Cesium chloride 0.00078125 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4530 and Pf6N2E2_4531 are separated by 157 nucleotidesPf6N2E2_4531 and Pf6N2E2_4532 are separated by 2 nucleotides Pf6N2E2_4530 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 5,263,855 to 5,265,942 _4530 Pf6N2E2_4531 - hypothetical protein, at 5,266,100 to 5,266,993 _4531 Pf6N2E2_4532 - Flagellum-specific ATP synthase FliI, at 5,266,996 to 5,268,351 _4532 Position (kb) 5266 5267Strain fitness (log2 ratio) -1 0 1at 5265.587 kb on - strand, within Pf6N2E2_4530at 5265.587 kb on - strand, within Pf6N2E2_4530at 5265.587 kb on - strand, within Pf6N2E2_4530at 5265.981 kb on + strandat 5266.053 kb on - strandat 5266.053 kb on - strandat 5266.206 kb on - strand, within Pf6N2E2_4531at 5266.977 kb on - strandat 5266.977 kb on - strandat 5267.513 kb on + strand, within Pf6N2E2_4532at 5267.514 kb on - strand, within Pf6N2E2_4532at 5267.885 kb on - strand, within Pf6N2E2_4532at 5267.950 kb on + strand, within Pf6N2E2_4532at 5267.951 kb on - strand, within Pf6N2E2_4532at 5267.951 kb on - strand, within Pf6N2E2_4532at 5267.952 kb on + strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532at 5267.953 kb on - strand, within Pf6N2E2_4532

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cesium chloride 0.00078125 M
remove
5,265,587 - Pf6N2E2_4530 0.83 -0.4
5,265,587 - Pf6N2E2_4530 0.83 -0.4
5,265,587 - Pf6N2E2_4530 0.83 +0.5
5,265,981 + +0.8
5,266,053 - +0.5
5,266,053 - +0.1
5,266,206 - Pf6N2E2_4531 0.12 -0.6
5,266,977 - +0.6
5,266,977 - -0.9
5,267,513 + Pf6N2E2_4532 0.38 +0.3
5,267,514 - Pf6N2E2_4532 0.38 +0.4
5,267,885 - Pf6N2E2_4532 0.66 +0.5
5,267,950 + Pf6N2E2_4532 0.70 +0.7
5,267,951 - Pf6N2E2_4532 0.70 +0.2
5,267,951 - Pf6N2E2_4532 0.70 -0.5
5,267,952 + Pf6N2E2_4532 0.71 -0.1
5,267,953 - Pf6N2E2_4532 0.71 -0.1
5,267,953 - Pf6N2E2_4532 0.71 -0.0
5,267,953 - Pf6N2E2_4532 0.71 +0.9
5,267,953 - Pf6N2E2_4532 0.71 -0.8

Or see this region's nucleotide sequence