Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4681 and Psyr_4682 are separated by 333 nucleotides Psyr_4682 and Psyr_4683 are separated by 153 nucleotides Psyr_4683 and Psyr_4684 are separated by 24 nucleotides Psyr_4684 and Psyr_4685 overlap by 8 nucleotides
Psyr_4681: Psyr_4681 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 5,548,767 to 5,550,572
_4681
Psyr_4682: Psyr_4682 - conserved hypothetical protein, at 5,550,906 to 5,551,202
_4682
Psyr_4683: Psyr_4683 - dethiobiotin synthase, at 5,551,356 to 5,552,036
_4683
Psyr_4684: Psyr_4684 - biotin synthesis protein BioC, at 5,552,061 to 5,552,870
_4684
Psyr_4685: Psyr_4685 - bioH protein, at 5,552,863 to 5,553,594
_4685
Position (kb) 5551
5552
5553 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5550.562 kb on + strand at 5550.562 kb on + strand at 5550.562 kb on + strand at 5550.562 kb on + strand at 5550.655 kb on + strand at 5550.656 kb on - strand at 5550.656 kb on - strand at 5550.688 kb on - strand at 5550.688 kb on - strand at 5550.712 kb on + strand at 5550.712 kb on + strand at 5550.763 kb on + strand at 5550.763 kb on + strand at 5550.763 kb on + strand at 5550.764 kb on - strand at 5550.790 kb on - strand at 5550.801 kb on + strand at 5550.802 kb on - strand at 5550.832 kb on + strand at 5550.832 kb on + strand at 5550.833 kb on - strand at 5550.833 kb on - strand at 5550.913 kb on + strand at 5550.914 kb on - strand at 5550.914 kb on - strand at 5550.914 kb on - strand at 5551.163 kb on + strand, within Psyr_4682 at 5551.203 kb on - strand at 5551.278 kb on + strand at 5551.279 kb on - strand at 5551.345 kb on + strand at 5551.381 kb on + strand at 5551.382 kb on - strand at 5551.530 kb on + strand, within Psyr_4683 at 5551.530 kb on + strand, within Psyr_4683 at 5551.531 kb on - strand, within Psyr_4683 at 5551.722 kb on - strand, within Psyr_4683 at 5551.722 kb on - strand, within Psyr_4683 at 5551.722 kb on - strand, within Psyr_4683 at 5551.722 kb on - strand, within Psyr_4683 at 5551.722 kb on - strand, within Psyr_4683 at 5551.831 kb on + strand, within Psyr_4683 at 5551.831 kb on + strand, within Psyr_4683 at 5551.832 kb on - strand, within Psyr_4683 at 5551.832 kb on - strand, within Psyr_4683 at 5552.023 kb on + strand at 5552.024 kb on - strand at 5552.024 kb on - strand at 5552.024 kb on - strand at 5552.095 kb on + strand at 5552.095 kb on + strand at 5552.096 kb on - strand at 5552.096 kb on - strand at 5552.096 kb on - strand at 5552.134 kb on + strand at 5552.392 kb on + strand, within Psyr_4684 at 5552.427 kb on + strand, within Psyr_4684 at 5552.630 kb on + strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.631 kb on - strand, within Psyr_4684 at 5552.782 kb on + strand, within Psyr_4684 at 5552.782 kb on + strand, within Psyr_4684 at 5552.782 kb on + strand, within Psyr_4684 at 5552.783 kb on - strand, within Psyr_4684
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 5,550,562 + +0.6 5,550,562 + -0.8 5,550,562 + +0.2 5,550,562 + -0.8 5,550,655 + -1.1 5,550,656 - +0.6 5,550,656 - -0.3 5,550,688 - +1.7 5,550,688 - -0.2 5,550,712 + +0.4 5,550,712 + -0.4 5,550,763 + +1.8 5,550,763 + -0.9 5,550,763 + +1.9 5,550,764 - -0.4 5,550,790 - -0.8 5,550,801 + -0.6 5,550,802 - -0.4 5,550,832 + -0.2 5,550,832 + +0.2 5,550,833 - -1.9 5,550,833 - -0.5 5,550,913 + -0.0 5,550,914 - -0.6 5,550,914 - +0.5 5,550,914 - +0.2 5,551,163 + Psyr_4682 0.87 -0.9 5,551,203 - +0.5 5,551,278 + -2.2 5,551,279 - -2.6 5,551,345 + -0.1 5,551,381 + +1.6 5,551,382 - +0.2 5,551,530 + Psyr_4683 0.26 -1.3 5,551,530 + Psyr_4683 0.26 -1.3 5,551,531 - Psyr_4683 0.26 -2.1 5,551,722 - Psyr_4683 0.54 -1.1 5,551,722 - Psyr_4683 0.54 -1.9 5,551,722 - Psyr_4683 0.54 -0.9 5,551,722 - Psyr_4683 0.54 +0.7 5,551,722 - Psyr_4683 0.54 -1.0 5,551,831 + Psyr_4683 0.70 -0.5 5,551,831 + Psyr_4683 0.70 -1.9 5,551,832 - Psyr_4683 0.70 -2.5 5,551,832 - Psyr_4683 0.70 -0.2 5,552,023 + +0.1 5,552,024 - +0.1 5,552,024 - -1.6 5,552,024 - -1.3 5,552,095 + -1.0 5,552,095 + -2.0 5,552,096 - -1.2 5,552,096 - +0.6 5,552,096 - -0.3 5,552,134 + -0.2 5,552,392 + Psyr_4684 0.41 -1.0 5,552,427 + Psyr_4684 0.45 -3.8 5,552,630 + Psyr_4684 0.70 -1.6 5,552,631 - Psyr_4684 0.70 -0.9 5,552,631 - Psyr_4684 0.70 -2.8 5,552,631 - Psyr_4684 0.70 -0.6 5,552,631 - Psyr_4684 0.70 -0.7 5,552,631 - Psyr_4684 0.70 -1.3 5,552,782 + Psyr_4684 0.89 -1.0 5,552,782 + Psyr_4684 0.89 -2.5 5,552,782 + Psyr_4684 0.89 -1.6 5,552,783 - Psyr_4684 0.89 -2.3
Or see this region's nucleotide sequence