Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2285

Experiment: KB with Nonanoic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2283 and Psyr_2284 are separated by 138 nucleotidesPsyr_2284 and Psyr_2285 are separated by 174 nucleotidesPsyr_2285 and Psyr_2286 overlap by 7 nucleotidesPsyr_2286 and Psyr_2287 are separated by 504 nucleotides Psyr_2283: Psyr_2283 - Secretion protein HlyD, at 2,653,659 to 2,654,819 _2283 Psyr_2284: Psyr_2284 - transcriptional regulator, LacI family, at 2,654,958 to 2,655,548 _2284 Psyr_2285: Psyr_2285 - Twin-arginine translocation pathway signal, at 2,655,723 to 2,656,328 _2285 Psyr_2286: Psyr_2286 - Protein of unknown function DUF461, at 2,656,322 to 2,656,816 _2286 Psyr_2287: Psyr_2287 - outer membrane transport energization protein TonB, at 2,657,321 to 2,658,154 _2287 Position (kb) 2655 2656 2657Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2654.813 kb on + strandat 2654.813 kb on + strandat 2654.814 kb on - strandat 2654.916 kb on - strandat 2654.924 kb on - strandat 2654.924 kb on - strandat 2654.924 kb on - strandat 2654.925 kb on + strandat 2654.925 kb on + strandat 2654.975 kb on + strandat 2654.976 kb on - strandat 2654.992 kb on + strandat 2654.992 kb on + strandat 2654.993 kb on - strandat 2654.993 kb on - strandat 2655.005 kb on - strandat 2655.578 kb on + strandat 2655.578 kb on + strandat 2655.579 kb on - strandat 2655.579 kb on - strandat 2656.087 kb on - strand, within Psyr_2285at 2656.201 kb on - strand, within Psyr_2285at 2656.201 kb on - strand, within Psyr_2285at 2656.201 kb on - strand, within Psyr_2285at 2656.227 kb on + strand, within Psyr_2285at 2656.250 kb on - strand, within Psyr_2285at 2656.321 kb on + strandat 2656.321 kb on + strandat 2656.322 kb on - strandat 2656.322 kb on - strandat 2656.322 kb on - strandat 2656.345 kb on + strandat 2657.120 kb on - strandat 2657.172 kb on - strandat 2657.189 kb on - strandat 2657.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
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2,654,813 + +1.2
2,654,813 + +2.5
2,654,814 - +2.8
2,654,916 - -0.2
2,654,924 - +0.5
2,654,924 - -0.6
2,654,924 - -1.9
2,654,925 + -1.0
2,654,925 + -0.2
2,654,975 + +0.0
2,654,976 - +0.1
2,654,992 + +1.2
2,654,992 + -0.1
2,654,993 - -0.2
2,654,993 - -0.5
2,655,005 - -0.8
2,655,578 + -0.3
2,655,578 + +0.1
2,655,579 - -0.3
2,655,579 - -1.4
2,656,087 - Psyr_2285 0.60 -2.3
2,656,201 - Psyr_2285 0.79 -1.0
2,656,201 - Psyr_2285 0.79 +0.6
2,656,201 - Psyr_2285 0.79 +0.2
2,656,227 + Psyr_2285 0.83 -1.6
2,656,250 - Psyr_2285 0.87 -2.1
2,656,321 + -0.4
2,656,321 + -1.6
2,656,322 - -1.3
2,656,322 - -2.1
2,656,322 - -0.1
2,656,345 + +2.8
2,657,120 - +0.4
2,657,172 - -2.3
2,657,189 - +1.2
2,657,317 - +0.1

Or see this region's nucleotide sequence