Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1650

Experiment: KB with Nonanoic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1649 and Psyr_1650 overlap by 1 nucleotidesPsyr_1650 and Psyr_1651 are separated by 20 nucleotides Psyr_1649: Psyr_1649 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 1,853,805 to 1,855,049 _1649 Psyr_1650: Psyr_1650 - aminodeoxychorismate lyase apoprotein, at 1,855,049 to 1,855,864 _1650 Psyr_1651: Psyr_1651 - Protein of unknown function DUF175, at 1,855,885 to 1,857,000 _1651 Position (kb) 1855 1856Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1854.702 kb on + strand, within Psyr_1649at 1855.112 kb on + strandat 1855.563 kb on + strand, within Psyr_1650at 1855.563 kb on + strand, within Psyr_1650at 1855.749 kb on + strand, within Psyr_1650at 1855.749 kb on + strand, within Psyr_1650at 1855.763 kb on + strand, within Psyr_1650at 1856.027 kb on + strand, within Psyr_1651at 1856.054 kb on + strand, within Psyr_1651at 1856.315 kb on + strand, within Psyr_1651at 1856.315 kb on + strand, within Psyr_1651at 1856.410 kb on + strand, within Psyr_1651at 1856.410 kb on + strand, within Psyr_1651at 1856.410 kb on + strand, within Psyr_1651at 1856.412 kb on + strand, within Psyr_1651at 1856.412 kb on + strand, within Psyr_1651at 1856.632 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.779 kb on + strand, within Psyr_1651

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
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1,854,702 + Psyr_1649 0.72 +0.1
1,855,112 + -1.1
1,855,563 + Psyr_1650 0.63 -2.1
1,855,563 + Psyr_1650 0.63 +2.1
1,855,749 + Psyr_1650 0.86 -1.7
1,855,749 + Psyr_1650 0.86 -0.2
1,855,763 + Psyr_1650 0.88 -0.6
1,856,027 + Psyr_1651 0.13 +0.0
1,856,054 + Psyr_1651 0.15 +3.7
1,856,315 + Psyr_1651 0.39 +0.7
1,856,315 + Psyr_1651 0.39 -1.1
1,856,410 + Psyr_1651 0.47 +0.1
1,856,410 + Psyr_1651 0.47 +1.0
1,856,410 + Psyr_1651 0.47 +0.1
1,856,412 + Psyr_1651 0.47 +2.1
1,856,412 + Psyr_1651 0.47 +1.1
1,856,632 + Psyr_1651 0.67 -0.9
1,856,686 + Psyr_1651 0.72 +1.6
1,856,686 + Psyr_1651 0.72 -0.6
1,856,686 + Psyr_1651 0.72 -1.6
1,856,686 + Psyr_1651 0.72 -2.0
1,856,686 + Psyr_1651 0.72 +0.3
1,856,686 + Psyr_1651 0.72 +0.8
1,856,779 + Psyr_1651 0.80 +0.3

Or see this region's nucleotide sequence