Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF25047

Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0030 and DORF25047 are separated by 277 nucleotidesDORF25047 and DVU0031 overlap by 1 nucleotidesDVU0031 and DVU0032 overlap by 11 nucleotides DVU0030: DVU0030 - transcriptional regulator, GntR family (TIGR), at 36,482 to 37,984 DVU0030 DORF25047: DORF25047 - no description, at 38,262 to 38,435 DORF25047 DVU0031: DVU0031 - AzlC family protein (TIGR), at 38,435 to 39,172 DVU0031 DVU0032: DVU0032 - conserved hypothetical protein (TIGR), at 39,162 to 39,497 DVU0032 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1at 37.340 kb on + strand, within DVU0030at 37.355 kb on + strand, within DVU0030at 37.394 kb on - strand, within DVU0030at 37.403 kb on + strand, within DVU0030at 37.408 kb on - strand, within DVU0030at 37.433 kb on + strand, within DVU0030at 37.453 kb on + strand, within DVU0030at 37.503 kb on + strand, within DVU0030at 37.506 kb on - strand, within DVU0030at 37.508 kb on + strand, within DVU0030at 37.508 kb on + strand, within DVU0030at 37.508 kb on + strand, within DVU0030at 37.508 kb on + strand, within DVU0030at 37.516 kb on - strand, within DVU0030at 37.516 kb on - strand, within DVU0030at 37.516 kb on - strand, within DVU0030at 37.516 kb on - strand, within DVU0030at 37.516 kb on - strand, within DVU0030at 37.516 kb on - strand, within DVU0030at 37.518 kb on + strand, within DVU0030at 37.526 kb on - strand, within DVU0030at 37.528 kb on - strand, within DVU0030at 37.640 kb on - strand, within DVU0030at 37.641 kb on - strand, within DVU0030at 37.641 kb on - strand, within DVU0030at 37.662 kb on + strand, within DVU0030at 37.662 kb on + strand, within DVU0030at 37.662 kb on + strand, within DVU0030at 37.670 kb on - strand, within DVU0030at 37.670 kb on - strand, within DVU0030at 37.670 kb on - strand, within DVU0030at 37.767 kb on + strand, within DVU0030at 37.809 kb on + strand, within DVU0030at 37.809 kb on + strand, within DVU0030at 37.817 kb on - strand, within DVU0030at 38.066 kb on - strandat 38.084 kb on - strandat 38.090 kb on + strandat 38.151 kb on + strandat 38.153 kb on + strandat 38.161 kb on - strandat 38.203 kb on + strandat 38.211 kb on - strandat 38.284 kb on - strand, within DORF25047at 38.286 kb on + strand, within DORF25047at 38.291 kb on + strand, within DORF25047at 38.291 kb on + strand, within DORF25047at 38.291 kb on - strand, within DORF25047at 38.300 kb on - strand, within DORF25047at 38.309 kb on + strand, within DORF25047at 38.324 kb on + strand, within DORF25047at 38.341 kb on + strand, within DORF25047at 38.383 kb on + strand, within DORF25047at 38.429 kb on + strandat 38.453 kb on + strandat 38.461 kb on - strandat 38.477 kb on + strandat 38.485 kb on - strandat 38.492 kb on + strandat 38.506 kb on - strandat 38.513 kb on + strand, within DVU0031at 38.513 kb on - strand, within DVU0031at 38.513 kb on - strand, within DVU0031at 38.580 kb on + strand, within DVU0031at 38.590 kb on + strand, within DVU0031at 38.598 kb on + strand, within DVU0031at 38.624 kb on + strand, within DVU0031at 38.629 kb on + strand, within DVU0031at 38.629 kb on + strand, within DVU0031at 38.629 kb on + strand, within DVU0031at 38.669 kb on - strand, within DVU0031at 38.729 kb on + strand, within DVU0031at 38.729 kb on + strand, within DVU0031at 38.753 kb on + strand, within DVU0031at 38.768 kb on + strand, within DVU0031at 38.776 kb on - strand, within DVU0031at 38.886 kb on - strand, within DVU0031at 38.893 kb on + strand, within DVU0031at 38.908 kb on - strand, within DVU0031at 38.915 kb on + strand, within DVU0031at 38.923 kb on - strand, within DVU0031at 38.941 kb on - strand, within DVU0031at 38.973 kb on + strand, within DVU0031at 38.998 kb on + strand, within DVU0031at 39.039 kb on - strand, within DVU0031at 39.043 kb on + strand, within DVU0031at 39.072 kb on + strand, within DVU0031at 39.083 kb on - strand, within DVU0031at 39.104 kb on + strandat 39.130 kb on + strandat 39.146 kb on + strandat 39.161 kb on + strandat 39.165 kb on - strandat 39.183 kb on + strandat 39.241 kb on - strand, within DVU0032at 39.265 kb on + strand, within DVU0032at 39.325 kb on + strand, within DVU0032at 39.364 kb on - strand, within DVU0032

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
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37,340 + DVU0030 0.57 -1.1
37,355 + DVU0030 0.58 +0.2
37,394 - DVU0030 0.61 +0.2
37,403 + DVU0030 0.61 -1.7
37,408 - DVU0030 0.62 -0.2
37,433 + DVU0030 0.63 -0.3
37,453 + DVU0030 0.65 -0.3
37,503 + DVU0030 0.68 -1.5
37,506 - DVU0030 0.68 -0.1
37,508 + DVU0030 0.68 -0.8
37,508 + DVU0030 0.68 -0.2
37,508 + DVU0030 0.68 -1.0
37,508 + DVU0030 0.68 -0.8
37,516 - DVU0030 0.69 +0.2
37,516 - DVU0030 0.69 -0.3
37,516 - DVU0030 0.69 +0.2
37,516 - DVU0030 0.69 +1.1
37,516 - DVU0030 0.69 +0.5
37,516 - DVU0030 0.69 -0.9
37,518 + DVU0030 0.69 +0.0
37,526 - DVU0030 0.69 +0.4
37,528 - DVU0030 0.70 +0.3
37,640 - DVU0030 0.77 -0.3
37,641 - DVU0030 0.77 -1.3
37,641 - DVU0030 0.77 +0.2
37,662 + DVU0030 0.79 -2.0
37,662 + DVU0030 0.79 +0.4
37,662 + DVU0030 0.79 -0.0
37,670 - DVU0030 0.79 -0.3
37,670 - DVU0030 0.79 -0.1
37,670 - DVU0030 0.79 -0.1
37,767 + DVU0030 0.85 -0.5
37,809 + DVU0030 0.88 +0.4
37,809 + DVU0030 0.88 +0.3
37,817 - DVU0030 0.89 -0.1
38,066 - -0.2
38,084 - +0.3
38,090 + -0.1
38,151 + -0.3
38,153 + -0.7
38,161 - -0.4
38,203 + -0.1
38,211 - +0.2
38,284 - DORF25047 0.13 +0.5
38,286 + DORF25047 0.14 -1.1
38,291 + DORF25047 0.17 -0.2
38,291 + DORF25047 0.17 +1.1
38,291 - DORF25047 0.17 -0.1
38,300 - DORF25047 0.22 +0.5
38,309 + DORF25047 0.27 -1.5
38,324 + DORF25047 0.36 +0.3
38,341 + DORF25047 0.45 +0.5
38,383 + DORF25047 0.70 +0.4
38,429 + -0.2
38,453 + +0.2
38,461 - -0.5
38,477 + +0.5
38,485 - +0.6
38,492 + -0.7
38,506 - -0.2
38,513 + DVU0031 0.11 -0.4
38,513 - DVU0031 0.11 +0.1
38,513 - DVU0031 0.11 +0.3
38,580 + DVU0031 0.20 -0.7
38,590 + DVU0031 0.21 +0.6
38,598 + DVU0031 0.22 -0.6
38,624 + DVU0031 0.26 -0.3
38,629 + DVU0031 0.26 -1.3
38,629 + DVU0031 0.26 -0.1
38,629 + DVU0031 0.26 -0.4
38,669 - DVU0031 0.32 +0.2
38,729 + DVU0031 0.40 +1.4
38,729 + DVU0031 0.40 +0.5
38,753 + DVU0031 0.43 +0.2
38,768 + DVU0031 0.45 -2.3
38,776 - DVU0031 0.46 +0.7
38,886 - DVU0031 0.61 -1.0
38,893 + DVU0031 0.62 -0.1
38,908 - DVU0031 0.64 -0.2
38,915 + DVU0031 0.65 -0.2
38,923 - DVU0031 0.66 -0.5
38,941 - DVU0031 0.69 +0.3
38,973 + DVU0031 0.73 -0.3
38,998 + DVU0031 0.76 +0.2
39,039 - DVU0031 0.82 -0.2
39,043 + DVU0031 0.82 +0.2
39,072 + DVU0031 0.86 +0.4
39,083 - DVU0031 0.88 -1.1
39,104 + -0.3
39,130 + -1.6
39,146 + -1.8
39,161 + -0.5
39,165 - -1.2
39,183 + -0.2
39,241 - DVU0032 0.24 -1.1
39,265 + DVU0032 0.31 +0.2
39,325 + DVU0032 0.49 +0.5
39,364 - DVU0032 0.60 -1.6

Or see this region's nucleotide sequence