Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18980 and BWI76_RS18985 are separated by 13 nucleotides BWI76_RS18985 and BWI76_RS18990 overlap by 1 nucleotides
BWI76_RS18980: BWI76_RS18980 - glycosyl transferase, at 3,936,388 to 3,938,280
_RS18980
BWI76_RS18985: BWI76_RS18985 - LPS O-antigen ABC transporter ATP-binding protein, at 3,938,294 to 3,939,034
_RS18985
BWI76_RS18990: BWI76_RS18990 - ABC transporter permease, at 3,939,034 to 3,939,801
_RS18990
Position (kb)
3939
3940 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3938.168 kb on - strand at 3938.186 kb on - strand at 3938.186 kb on - strand at 3938.188 kb on - strand at 3938.192 kb on + strand at 3938.193 kb on - strand at 3938.200 kb on - strand at 3938.200 kb on - strand at 3938.200 kb on - strand at 3938.200 kb on - strand at 3938.233 kb on - strand at 3938.245 kb on - strand at 3938.250 kb on - strand at 3938.266 kb on - strand at 3938.273 kb on - strand at 3938.408 kb on - strand, within BWI76_RS18985 at 3938.411 kb on - strand, within BWI76_RS18985 at 3938.415 kb on - strand, within BWI76_RS18985 at 3938.425 kb on + strand, within BWI76_RS18985 at 3938.458 kb on - strand, within BWI76_RS18985 at 3938.459 kb on - strand, within BWI76_RS18985 at 3938.459 kb on - strand, within BWI76_RS18985 at 3938.583 kb on - strand, within BWI76_RS18985 at 3938.594 kb on - strand, within BWI76_RS18985 at 3938.619 kb on - strand, within BWI76_RS18985 at 3938.666 kb on - strand, within BWI76_RS18985 at 3938.674 kb on - strand, within BWI76_RS18985 at 3938.755 kb on - strand, within BWI76_RS18985 at 3938.755 kb on - strand, within BWI76_RS18985 at 3938.770 kb on - strand, within BWI76_RS18985 at 3938.798 kb on - strand, within BWI76_RS18985 at 3938.828 kb on - strand, within BWI76_RS18985 at 3938.833 kb on - strand, within BWI76_RS18985 at 3938.833 kb on - strand, within BWI76_RS18985 at 3938.833 kb on - strand, within BWI76_RS18985 at 3938.848 kb on - strand, within BWI76_RS18985 at 3938.848 kb on - strand, within BWI76_RS18985 at 3938.852 kb on - strand, within BWI76_RS18985 at 3938.852 kb on - strand, within BWI76_RS18985 at 3938.869 kb on - strand, within BWI76_RS18985 at 3938.869 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.874 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.923 kb on - strand, within BWI76_RS18985 at 3938.945 kb on - strand, within BWI76_RS18985 at 3938.974 kb on - strand at 3939.040 kb on - strand at 3939.043 kb on - strand at 3939.099 kb on - strand at 3939.104 kb on - strand at 3939.118 kb on - strand, within BWI76_RS18990 at 3939.120 kb on - strand, within BWI76_RS18990 at 3939.120 kb on - strand, within BWI76_RS18990 at 3939.120 kb on - strand, within BWI76_RS18990 at 3939.192 kb on - strand, within BWI76_RS18990 at 3939.193 kb on - strand, within BWI76_RS18990 at 3939.193 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.209 kb on - strand, within BWI76_RS18990 at 3939.266 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand at 3939.357 kb on - strand, within BWI76_RS18990 at 3939.358 kb on - strand, within BWI76_RS18990 at 3939.379 kb on - strand, within BWI76_RS18990 at 3939.393 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.418 kb on - strand, within BWI76_RS18990 at 3939.423 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.471 kb on - strand, within BWI76_RS18990 at 3939.488 kb on - strand, within BWI76_RS18990 at 3939.584 kb on - strand, within BWI76_RS18990 at 3939.591 kb on - strand, within BWI76_RS18990 at 3939.594 kb on - strand, within BWI76_RS18990 at 3939.594 kb on - strand, within BWI76_RS18990 at 3939.746 kb on - strand at 3939.747 kb on - strand at 3939.836 kb on + strand at 3939.844 kb on - strand at 3939.844 kb on - strand at 3939.844 kb on - strand at 3939.849 kb on - strand at 3939.849 kb on - strand at 3939.849 kb on - strand at 3939.849 kb on - strand at 3939.851 kb on - strand at 3939.851 kb on - strand at 3939.859 kb on - strand at 3939.900 kb on - strand at 3939.905 kb on - strand at 3939.912 kb on + strand at 3939.913 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.928 kb on - strand at 3939.946 kb on - strand at 3939.973 kb on + strand at 3939.974 kb on - strand at 3939.974 kb on - strand at 3939.986 kb on - strand at 3940.006 kb on + strand at 3940.014 kb on - strand at 3940.049 kb on - strand at 3940.275 kb on - strand at 3940.287 kb on + strand at 3940.348 kb on + strand at 3940.351 kb on - strand at 3940.356 kb on - strand at 3940.383 kb on + strand at 3940.383 kb on + strand at 3940.387 kb on - strand at 3940.391 kb on - strand at 3940.397 kb on - strand at 3940.408 kb on + strand at 3940.409 kb on + strand at 3940.416 kb on - strand at 3940.478 kb on + strand at 3940.486 kb on - strand at 3940.514 kb on + strand at 3940.514 kb on + strand at 3940.514 kb on + strand at 3940.514 kb on + strand at 3940.522 kb on - strand at 3940.522 kb on - strand at 3940.522 kb on - strand at 3940.522 kb on - strand at 3940.523 kb on - strand at 3940.553 kb on + strand at 3940.571 kb on + strand at 3940.581 kb on + strand at 3940.583 kb on + strand at 3940.586 kb on + strand at 3940.586 kb on + strand at 3940.586 kb on + strand at 3940.586 kb on + strand at 3940.588 kb on + strand at 3940.594 kb on - strand at 3940.594 kb on - strand at 3940.594 kb on - strand at 3940.596 kb on - strand at 3940.605 kb on + strand at 3940.609 kb on + strand at 3940.610 kb on + strand at 3940.617 kb on - strand at 3940.618 kb on - strand at 3940.639 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 3,938,168 - +0.1 3,938,186 - -1.3 3,938,186 - +0.0 3,938,188 - -0.7 3,938,192 + +1.2 3,938,193 - -0.1 3,938,200 - +0.7 3,938,200 - -0.2 3,938,200 - +0.2 3,938,200 - -0.0 3,938,233 - -0.4 3,938,245 - +0.0 3,938,250 - -0.1 3,938,266 - -0.2 3,938,273 - -0.2 3,938,408 - BWI76_RS18985 0.15 +0.4 3,938,411 - BWI76_RS18985 0.16 +0.8 3,938,415 - BWI76_RS18985 0.16 +0.8 3,938,425 + BWI76_RS18985 0.18 +0.5 3,938,458 - BWI76_RS18985 0.22 +0.1 3,938,459 - BWI76_RS18985 0.22 -0.1 3,938,459 - BWI76_RS18985 0.22 -0.3 3,938,583 - BWI76_RS18985 0.39 +0.0 3,938,594 - BWI76_RS18985 0.40 +0.4 3,938,619 - BWI76_RS18985 0.44 +0.6 3,938,666 - BWI76_RS18985 0.50 +0.9 3,938,674 - BWI76_RS18985 0.51 -0.8 3,938,755 - BWI76_RS18985 0.62 +0.5 3,938,755 - BWI76_RS18985 0.62 -0.4 3,938,770 - BWI76_RS18985 0.64 +0.7 3,938,798 - BWI76_RS18985 0.68 +1.3 3,938,828 - BWI76_RS18985 0.72 +0.5 3,938,833 - BWI76_RS18985 0.73 +1.5 3,938,833 - BWI76_RS18985 0.73 -0.1 3,938,833 - BWI76_RS18985 0.73 +0.2 3,938,848 - BWI76_RS18985 0.75 -0.4 3,938,848 - BWI76_RS18985 0.75 +1.0 3,938,852 - BWI76_RS18985 0.75 +0.2 3,938,852 - BWI76_RS18985 0.75 +0.1 3,938,869 - BWI76_RS18985 0.78 +0.8 3,938,869 - BWI76_RS18985 0.78 +0.3 3,938,870 - BWI76_RS18985 0.78 -0.3 3,938,870 - BWI76_RS18985 0.78 +1.0 3,938,870 - BWI76_RS18985 0.78 +0.7 3,938,870 - BWI76_RS18985 0.78 +0.3 3,938,874 - BWI76_RS18985 0.78 +0.3 3,938,876 - BWI76_RS18985 0.79 +0.5 3,938,876 - BWI76_RS18985 0.79 +1.9 3,938,876 - BWI76_RS18985 0.79 +0.9 3,938,876 - BWI76_RS18985 0.79 +0.4 3,938,876 - BWI76_RS18985 0.79 +1.1 3,938,923 - BWI76_RS18985 0.85 +0.9 3,938,945 - BWI76_RS18985 0.88 +0.7 3,938,974 - +0.6 3,939,040 - -0.2 3,939,043 - +0.9 3,939,099 - +1.6 3,939,104 - +0.9 3,939,118 - BWI76_RS18990 0.11 +0.1 3,939,120 - BWI76_RS18990 0.11 +1.0 3,939,120 - BWI76_RS18990 0.11 +0.6 3,939,120 - BWI76_RS18990 0.11 +1.1 3,939,192 - BWI76_RS18990 0.21 +1.7 3,939,193 - BWI76_RS18990 0.21 +0.1 3,939,193 - BWI76_RS18990 0.21 +0.8 3,939,199 - BWI76_RS18990 0.21 +0.1 3,939,199 - BWI76_RS18990 0.21 +0.6 3,939,199 - BWI76_RS18990 0.21 +1.6 3,939,199 - BWI76_RS18990 0.21 +1.5 3,939,199 - BWI76_RS18990 0.21 +1.4 3,939,199 - BWI76_RS18990 0.21 +1.3 3,939,199 - BWI76_RS18990 0.21 +1.0 3,939,199 - BWI76_RS18990 0.21 +0.5 3,939,209 - BWI76_RS18990 0.23 +0.9 3,939,266 - BWI76_RS18990 0.30 -0.3 3,939,278 - BWI76_RS18990 0.32 +0.7 3,939,278 - BWI76_RS18990 0.32 +0.0 3,939,278 - BWI76_RS18990 0.32 +0.6 3,939,278 - BWI76_RS18990 0.32 +0.8 3,939,278 - BWI76_RS18990 0.32 -1.8 3,939,278 - BWI76_RS18990 0.32 +0.5 3,939,278 - BWI76_RS18990 0.32 -0.4 3,939,278 - +2.4 3,939,357 - BWI76_RS18990 0.42 +0.0 3,939,358 - BWI76_RS18990 0.42 +0.8 3,939,379 - BWI76_RS18990 0.45 +0.6 3,939,393 - BWI76_RS18990 0.47 +2.7 3,939,394 - BWI76_RS18990 0.47 -0.4 3,939,394 - BWI76_RS18990 0.47 +0.6 3,939,394 - BWI76_RS18990 0.47 +0.3 3,939,394 - BWI76_RS18990 0.47 +1.0 3,939,418 - BWI76_RS18990 0.50 +0.9 3,939,423 - BWI76_RS18990 0.51 +1.0 3,939,460 - BWI76_RS18990 0.55 +1.2 3,939,460 - BWI76_RS18990 0.55 +0.5 3,939,460 - BWI76_RS18990 0.55 +1.0 3,939,460 - BWI76_RS18990 0.55 +0.2 3,939,460 - BWI76_RS18990 0.55 +1.2 3,939,471 - BWI76_RS18990 0.57 +0.8 3,939,488 - BWI76_RS18990 0.59 +0.9 3,939,584 - BWI76_RS18990 0.72 +0.3 3,939,591 - BWI76_RS18990 0.73 +0.7 3,939,594 - BWI76_RS18990 0.73 +1.2 3,939,594 - BWI76_RS18990 0.73 +0.6 3,939,746 - +0.6 3,939,747 - +0.6 3,939,836 + -1.8 3,939,844 - -0.3 3,939,844 - +0.9 3,939,844 - +0.1 3,939,849 - -0.8 3,939,849 - -0.0 3,939,849 - +1.0 3,939,849 - +0.7 3,939,851 - +1.2 3,939,851 - +0.1 3,939,859 - +0.0 3,939,900 - -0.3 3,939,905 - -0.2 3,939,912 + +1.0 3,939,913 - -0.4 3,939,918 - -1.4 3,939,918 - -0.6 3,939,918 - +0.1 3,939,918 - -1.5 3,939,918 - +0.3 3,939,918 - +0.2 3,939,918 - +0.1 3,939,918 - -3.1 3,939,918 - +0.2 3,939,918 - -0.2 3,939,918 - -0.1 3,939,918 - +0.3 3,939,918 - -0.1 3,939,918 - +0.8 3,939,918 - +0.1 3,939,920 - +0.1 3,939,920 - +0.3 3,939,920 - -0.2 3,939,920 - -0.4 3,939,920 - -0.5 3,939,920 - +0.9 3,939,920 - +0.4 3,939,920 - +0.1 3,939,928 - +0.9 3,939,946 - +0.4 3,939,973 + -0.3 3,939,974 - +0.8 3,939,974 - +0.3 3,939,986 - +0.2 3,940,006 + -2.8 3,940,014 - +0.3 3,940,049 - +0.2 3,940,275 - -0.2 3,940,287 + -1.2 3,940,348 + -1.2 3,940,351 - +0.2 3,940,356 - +1.0 3,940,383 + +1.4 3,940,383 + -2.5 3,940,387 - -0.7 3,940,391 - +0.4 3,940,397 - +0.1 3,940,408 + +0.0 3,940,409 + -0.6 3,940,416 - -0.0 3,940,478 + +0.2 3,940,486 - +0.4 3,940,514 + +1.0 3,940,514 + +0.0 3,940,514 + -0.4 3,940,514 + -1.2 3,940,522 - -0.4 3,940,522 - +0.2 3,940,522 - +0.6 3,940,522 - +0.3 3,940,523 - -0.2 3,940,553 + -0.6 3,940,571 + -0.6 3,940,581 + -0.2 3,940,583 + +0.6 3,940,586 + -0.3 3,940,586 + -1.3 3,940,586 + -1.2 3,940,586 + +0.2 3,940,588 + +0.8 3,940,594 - +1.2 3,940,594 - -0.4 3,940,594 - -0.6 3,940,596 - +0.8 3,940,605 + +1.0 3,940,609 + -0.1 3,940,610 + -0.3 3,940,617 - -0.0 3,940,618 - +0.9 3,940,639 + +0.6
Or see this region's nucleotide sequence