Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5222 and Pf6N2E2_5223 overlap by 7 nucleotides Pf6N2E2_5223 and Pf6N2E2_5224 overlap by 8 nucleotides Pf6N2E2_5224 and Pf6N2E2_5225 are separated by 114 nucleotides Pf6N2E2_5225 and Pf6N2E2_5226 are separated by 59 nucleotides
Pf6N2E2_5222 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 6,021,016 to 6,021,846
_5222
Pf6N2E2_5223 - Molybdopterin biosynthesis protein MoeB, at 6,021,840 to 6,022,595
_5223
Pf6N2E2_5224 - Glutamate racemase (EC 5.1.1.3), at 6,022,588 to 6,023,379
_5224
Pf6N2E2_5225 - Lipid A 3-O-deacylase, at 6,023,494 to 6,024,012
_5225
Pf6N2E2_5226 - FIG00955589: hypothetical protein, at 6,024,072 to 6,024,377
_5226
Position (kb)
6022
6023
6024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6021.978 kb on + strand, within Pf6N2E2_5223 at 6021.978 kb on + strand, within Pf6N2E2_5223 at 6021.978 kb on + strand, within Pf6N2E2_5223 at 6021.978 kb on + strand, within Pf6N2E2_5223 at 6022.271 kb on + strand, within Pf6N2E2_5223 at 6022.353 kb on + strand, within Pf6N2E2_5223 at 6022.365 kb on + strand, within Pf6N2E2_5223 at 6022.365 kb on + strand, within Pf6N2E2_5223 at 6023.334 kb on + strand at 6023.334 kb on + strand at 6023.334 kb on + strand at 6023.339 kb on + strand at 6023.436 kb on - strand at 6023.437 kb on + strand at 6023.466 kb on + strand at 6023.466 kb on + strand at 6023.466 kb on + strand at 6023.466 kb on + strand at 6023.466 kb on + strand at 6023.467 kb on - strand at 6023.467 kb on - strand at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.548 kb on + strand, within Pf6N2E2_5225 at 6023.549 kb on - strand, within Pf6N2E2_5225 at 6023.549 kb on - strand, within Pf6N2E2_5225 at 6023.549 kb on - strand, within Pf6N2E2_5225 at 6023.611 kb on + strand, within Pf6N2E2_5225 at 6023.612 kb on - strand, within Pf6N2E2_5225 at 6023.695 kb on + strand, within Pf6N2E2_5225 at 6023.695 kb on + strand, within Pf6N2E2_5225 at 6023.696 kb on - strand, within Pf6N2E2_5225 at 6023.696 kb on - strand, within Pf6N2E2_5225 at 6023.696 kb on - strand, within Pf6N2E2_5225 at 6023.696 kb on - strand, within Pf6N2E2_5225 at 6023.696 kb on - strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.697 kb on + strand, within Pf6N2E2_5225 at 6023.698 kb on - strand, within Pf6N2E2_5225 at 6023.701 kb on + strand, within Pf6N2E2_5225 at 6023.701 kb on + strand, within Pf6N2E2_5225 at 6023.701 kb on + strand, within Pf6N2E2_5225 at 6023.701 kb on + strand, within Pf6N2E2_5225 at 6023.701 kb on + strand, within Pf6N2E2_5225 at 6023.702 kb on - strand, within Pf6N2E2_5225 at 6023.702 kb on - strand, within Pf6N2E2_5225 at 6023.702 kb on - strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.791 kb on + strand, within Pf6N2E2_5225 at 6023.792 kb on - strand, within Pf6N2E2_5225 at 6023.792 kb on - strand, within Pf6N2E2_5225 at 6023.792 kb on - strand, within Pf6N2E2_5225 at 6023.792 kb on - strand, within Pf6N2E2_5225 at 6023.938 kb on + strand, within Pf6N2E2_5225 at 6023.938 kb on + strand, within Pf6N2E2_5225 at 6023.975 kb on + strand at 6023.975 kb on + strand at 6023.975 kb on + strand at 6023.975 kb on + strand at 6023.976 kb on - strand at 6023.976 kb on - strand at 6024.008 kb on + strand at 6024.011 kb on - strand at 6024.011 kb on - strand at 6024.055 kb on + strand at 6024.055 kb on + strand at 6024.055 kb on + strand at 6024.056 kb on - strand at 6024.056 kb on - strand at 6024.056 kb on - strand at 6024.056 kb on - strand at 6024.164 kb on - strand, within Pf6N2E2_5226 at 6024.164 kb on - strand, within Pf6N2E2_5226
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 6,021,978 + Pf6N2E2_5223 0.18 -0.9 6,021,978 + Pf6N2E2_5223 0.18 +2.2 6,021,978 + Pf6N2E2_5223 0.18 +1.1 6,021,978 + Pf6N2E2_5223 0.18 +0.1 6,022,271 + Pf6N2E2_5223 0.57 -0.7 6,022,353 + Pf6N2E2_5223 0.68 +0.3 6,022,365 + Pf6N2E2_5223 0.69 -0.1 6,022,365 + Pf6N2E2_5223 0.69 -0.1 6,023,334 + +0.6 6,023,334 + +0.2 6,023,334 + -0.6 6,023,339 + +0.3 6,023,436 - -0.3 6,023,437 + -0.9 6,023,466 + -0.2 6,023,466 + -0.8 6,023,466 + +0.1 6,023,466 + -1.0 6,023,466 + -1.1 6,023,467 - +0.1 6,023,467 - -0.0 6,023,548 + Pf6N2E2_5225 0.10 -2.1 6,023,548 + Pf6N2E2_5225 0.10 -1.0 6,023,548 + Pf6N2E2_5225 0.10 -0.2 6,023,548 + Pf6N2E2_5225 0.10 +0.4 6,023,548 + Pf6N2E2_5225 0.10 +0.1 6,023,548 + Pf6N2E2_5225 0.10 -0.7 6,023,548 + Pf6N2E2_5225 0.10 +0.8 6,023,548 + Pf6N2E2_5225 0.10 +0.0 6,023,548 + Pf6N2E2_5225 0.10 -0.2 6,023,549 - Pf6N2E2_5225 0.11 +0.0 6,023,549 - Pf6N2E2_5225 0.11 -0.5 6,023,549 - Pf6N2E2_5225 0.11 -0.1 6,023,611 + Pf6N2E2_5225 0.23 +0.3 6,023,612 - Pf6N2E2_5225 0.23 -0.2 6,023,695 + Pf6N2E2_5225 0.39 -0.2 6,023,695 + Pf6N2E2_5225 0.39 -0.1 6,023,696 - Pf6N2E2_5225 0.39 +0.7 6,023,696 - Pf6N2E2_5225 0.39 -1.2 6,023,696 - Pf6N2E2_5225 0.39 -2.4 6,023,696 - Pf6N2E2_5225 0.39 -2.1 6,023,696 - Pf6N2E2_5225 0.39 -0.0 6,023,697 + Pf6N2E2_5225 0.39 +0.5 6,023,697 + Pf6N2E2_5225 0.39 +0.6 6,023,697 + Pf6N2E2_5225 0.39 -0.3 6,023,697 + Pf6N2E2_5225 0.39 -0.8 6,023,697 + Pf6N2E2_5225 0.39 -0.9 6,023,697 + Pf6N2E2_5225 0.39 +0.4 6,023,697 + Pf6N2E2_5225 0.39 +0.6 6,023,697 + Pf6N2E2_5225 0.39 -0.8 6,023,698 - Pf6N2E2_5225 0.39 -0.6 6,023,701 + Pf6N2E2_5225 0.40 -0.1 6,023,701 + Pf6N2E2_5225 0.40 -1.1 6,023,701 + Pf6N2E2_5225 0.40 +0.4 6,023,701 + Pf6N2E2_5225 0.40 +1.0 6,023,701 + Pf6N2E2_5225 0.40 -0.3 6,023,702 - Pf6N2E2_5225 0.40 +0.5 6,023,702 - Pf6N2E2_5225 0.40 -0.4 6,023,702 - Pf6N2E2_5225 0.40 -0.5 6,023,791 + Pf6N2E2_5225 0.57 -1.6 6,023,791 + Pf6N2E2_5225 0.57 -1.5 6,023,791 + Pf6N2E2_5225 0.57 -0.6 6,023,791 + Pf6N2E2_5225 0.57 -1.1 6,023,791 + Pf6N2E2_5225 0.57 +0.2 6,023,791 + Pf6N2E2_5225 0.57 +0.4 6,023,791 + Pf6N2E2_5225 0.57 -0.6 6,023,792 - Pf6N2E2_5225 0.57 -1.4 6,023,792 - Pf6N2E2_5225 0.57 -0.4 6,023,792 - Pf6N2E2_5225 0.57 -0.9 6,023,792 - Pf6N2E2_5225 0.57 -0.5 6,023,938 + Pf6N2E2_5225 0.86 -1.8 6,023,938 + Pf6N2E2_5225 0.86 +0.1 6,023,975 + +0.6 6,023,975 + +0.3 6,023,975 + +0.1 6,023,975 + -1.1 6,023,976 - -0.6 6,023,976 - -0.9 6,024,008 + +0.7 6,024,011 - -0.8 6,024,011 - +0.2 6,024,055 + -0.3 6,024,055 + -1.8 6,024,055 + -0.3 6,024,056 - +0.1 6,024,056 - +0.0 6,024,056 - -0.8 6,024,056 - +0.3 6,024,164 - Pf6N2E2_5226 0.30 +0.9 6,024,164 - Pf6N2E2_5226 0.30 +0.9
Or see this region's nucleotide sequence