Strain Fitness in Sinorhizobium meliloti 1021 around SMc03766

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03765 and SMc03766 are separated by 2 nucleotidesSMc03766 and SMc03767 are separated by 509 nucleotides SMc03765: SMc03765 - hypothetical protein, at 3,430,405 to 3,431,994 SMc03765 SMc03766: SMc03766 - hypothetical protein, at 3,431,997 to 3,432,764 SMc03766 SMc03767: SMc03767 - hypothetical protein, at 3,433,274 to 3,434,392 SMc03767 Position (kb) 3431 3432 3433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3431.024 kb on - strand, within SMc03765at 3431.029 kb on + strand, within SMc03765at 3431.030 kb on - strand, within SMc03765at 3431.041 kb on - strand, within SMc03765at 3431.056 kb on + strand, within SMc03765at 3431.317 kb on + strand, within SMc03765at 3431.356 kb on - strand, within SMc03765at 3431.360 kb on + strand, within SMc03765at 3431.360 kb on + strand, within SMc03765at 3431.360 kb on + strand, within SMc03765at 3431.372 kb on + strand, within SMc03765at 3431.372 kb on + strand, within SMc03765at 3431.498 kb on - strand, within SMc03765at 3431.521 kb on + strand, within SMc03765at 3431.521 kb on + strand, within SMc03765at 3431.522 kb on - strand, within SMc03765at 3431.527 kb on + strand, within SMc03765at 3431.528 kb on - strand, within SMc03765at 3431.551 kb on - strand, within SMc03765at 3431.552 kb on + strand, within SMc03765at 3431.552 kb on + strand, within SMc03765at 3431.553 kb on - strand, within SMc03765at 3431.593 kb on + strand, within SMc03765at 3431.594 kb on - strand, within SMc03765at 3431.638 kb on + strand, within SMc03765at 3431.639 kb on - strand, within SMc03765at 3431.639 kb on - strand, within SMc03765at 3431.641 kb on + strand, within SMc03765at 3431.642 kb on - strand, within SMc03765at 3431.642 kb on - strand, within SMc03765at 3431.684 kb on + strand, within SMc03765at 3431.684 kb on + strand, within SMc03765at 3431.685 kb on - strand, within SMc03765at 3431.710 kb on - strand, within SMc03765at 3431.732 kb on + strand, within SMc03765at 3431.733 kb on - strand, within SMc03765at 3431.760 kb on + strand, within SMc03765at 3431.780 kb on + strand, within SMc03765at 3431.780 kb on + strand, within SMc03765at 3432.307 kb on + strand, within SMc03766at 3432.321 kb on - strand, within SMc03766at 3432.345 kb on + strand, within SMc03766at 3432.408 kb on - strand, within SMc03766at 3432.409 kb on + strand, within SMc03766at 3432.409 kb on + strand, within SMc03766at 3432.410 kb on - strand, within SMc03766at 3432.410 kb on - strand, within SMc03766at 3432.450 kb on + strand, within SMc03766at 3432.450 kb on + strand, within SMc03766at 3432.487 kb on + strand, within SMc03766at 3432.488 kb on - strand, within SMc03766at 3432.583 kb on - strand, within SMc03766at 3432.635 kb on + strand, within SMc03766at 3432.765 kb on - strandat 3432.817 kb on - strandat 3432.914 kb on + strandat 3433.026 kb on + strandat 3433.027 kb on - strandat 3433.083 kb on - strandat 3433.083 kb on - strandat 3433.180 kb on - strandat 3433.185 kb on - strandat 3433.337 kb on + strandat 3433.338 kb on - strandat 3433.356 kb on - strandat 3433.404 kb on + strand, within SMc03767at 3433.515 kb on - strand, within SMc03767at 3433.545 kb on - strand, within SMc03767at 3433.590 kb on - strand, within SMc03767at 3433.593 kb on - strand, within SMc03767at 3433.615 kb on + strand, within SMc03767at 3433.695 kb on - strandat 3433.747 kb on + strand, within SMc03767at 3433.747 kb on + strand, within SMc03767

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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3,431,024 - SMc03765 0.39 +0.6
3,431,029 + SMc03765 0.39 +0.6
3,431,030 - SMc03765 0.39 +0.9
3,431,041 - SMc03765 0.40 +0.8
3,431,056 + SMc03765 0.41 +1.4
3,431,317 + SMc03765 0.57 +1.1
3,431,356 - SMc03765 0.60 +0.4
3,431,360 + SMc03765 0.60 +0.4
3,431,360 + SMc03765 0.60 +0.8
3,431,360 + SMc03765 0.60 +0.7
3,431,372 + SMc03765 0.61 +4.4
3,431,372 + SMc03765 0.61 +0.8
3,431,498 - SMc03765 0.69 +1.2
3,431,521 + SMc03765 0.70 +2.2
3,431,521 + SMc03765 0.70 +1.1
3,431,522 - SMc03765 0.70 +0.3
3,431,527 + SMc03765 0.71 -3.6
3,431,528 - SMc03765 0.71 +2.2
3,431,551 - SMc03765 0.72 +0.6
3,431,552 + SMc03765 0.72 -0.1
3,431,552 + SMc03765 0.72 -1.2
3,431,553 - SMc03765 0.72 +0.7
3,431,593 + SMc03765 0.75 +1.7
3,431,594 - SMc03765 0.75 +0.6
3,431,638 + SMc03765 0.78 +1.9
3,431,639 - SMc03765 0.78 +0.4
3,431,639 - SMc03765 0.78 -0.1
3,431,641 + SMc03765 0.78 +1.0
3,431,642 - SMc03765 0.78 +1.0
3,431,642 - SMc03765 0.78 +0.6
3,431,684 + SMc03765 0.80 +1.0
3,431,684 + SMc03765 0.80 +0.5
3,431,685 - SMc03765 0.81 +2.4
3,431,710 - SMc03765 0.82 +0.2
3,431,732 + SMc03765 0.83 +0.9
3,431,733 - SMc03765 0.84 +0.4
3,431,760 + SMc03765 0.85 -1.2
3,431,780 + SMc03765 0.86 +1.6
3,431,780 + SMc03765 0.86 +5.6
3,432,307 + SMc03766 0.40 +0.7
3,432,321 - SMc03766 0.42 -0.9
3,432,345 + SMc03766 0.45 +1.2
3,432,408 - SMc03766 0.54 +0.4
3,432,409 + SMc03766 0.54 -0.0
3,432,409 + SMc03766 0.54 +2.3
3,432,410 - SMc03766 0.54 +0.9
3,432,410 - SMc03766 0.54 +1.2
3,432,450 + SMc03766 0.59 +0.3
3,432,450 + SMc03766 0.59 +1.2
3,432,487 + SMc03766 0.64 +1.2
3,432,488 - SMc03766 0.64 +0.7
3,432,583 - SMc03766 0.76 +2.0
3,432,635 + SMc03766 0.83 +0.2
3,432,765 - +1.6
3,432,817 - -0.7
3,432,914 + +0.5
3,433,026 + -0.2
3,433,027 - +1.4
3,433,083 - +0.3
3,433,083 - +0.6
3,433,180 - +0.9
3,433,185 - +0.8
3,433,337 + +1.2
3,433,338 - -0.4
3,433,356 - -1.0
3,433,404 + SMc03767 0.12 +1.2
3,433,515 - SMc03767 0.22 +0.4
3,433,545 - SMc03767 0.24 +0.2
3,433,590 - SMc03767 0.28 +0.9
3,433,593 - SMc03767 0.29 -0.1
3,433,615 + SMc03767 0.30 +0.7
3,433,695 - +1.4
3,433,747 + SMc03767 0.42 +0.9
3,433,747 + SMc03767 0.42 +0.4

Or see this region's nucleotide sequence