Experiment: MoYLS4 with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt livF and livG overlap by 1 nucleotides livG and livM are separated by 9 nucleotides
DVU2740: livF - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein (TIGR), at 2,845,923 to 2,846,648
livF
DVU2741: livG - high-affinity branched chain amino acid ABC transporter, ATP-binding protein (TIGR), at 2,846,648 to 2,847,415
livG
DVU2742: livM - high-affinity branched chain amino acid ABC transporter, permease protein (TIGR), at 2,847,425 to 2,848,501
livM
Position (kb)
2846
2847
2848 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2845.717 kb on - strand at 2845.744 kb on + strand at 2845.754 kb on + strand at 2845.782 kb on + strand at 2845.899 kb on + strand at 2845.957 kb on - strand at 2846.004 kb on + strand, within livF at 2846.004 kb on + strand, within livF at 2846.012 kb on - strand, within livF at 2846.173 kb on - strand, within livF at 2846.217 kb on + strand, within livF at 2846.350 kb on + strand, within livF at 2846.414 kb on - strand, within livF at 2846.423 kb on + strand, within livF at 2846.673 kb on + strand at 2846.727 kb on + strand, within livG at 2846.758 kb on + strand, within livG at 2846.776 kb on + strand, within livG at 2846.930 kb on + strand, within livG at 2847.021 kb on - strand, within livG at 2847.083 kb on - strand, within livG at 2847.085 kb on + strand, within livG at 2847.085 kb on + strand, within livG at 2847.087 kb on + strand, within livG at 2847.087 kb on + strand, within livG at 2847.087 kb on + strand, within livG at 2847.094 kb on - strand, within livG at 2847.095 kb on - strand, within livG at 2847.107 kb on - strand, within livG at 2847.139 kb on + strand, within livG at 2847.175 kb on - strand, within livG at 2847.179 kb on + strand, within livG at 2847.371 kb on - strand at 2847.498 kb on + strand at 2847.501 kb on - strand at 2847.506 kb on - strand at 2847.556 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.591 kb on - strand, within livM at 2847.591 kb on - strand, within livM at 2847.591 kb on - strand, within livM at 2847.762 kb on + strand, within livM at 2847.939 kb on + strand, within livM at 2847.961 kb on + strand, within livM at 2847.995 kb on + strand, within livM at 2848.062 kb on - strand, within livM at 2848.196 kb on - strand, within livM at 2848.210 kb on - strand, within livM at 2848.219 kb on + strand, within livM at 2848.224 kb on + strand, within livM at 2848.232 kb on - strand, within livM at 2848.247 kb on - strand, within livM at 2848.363 kb on + strand, within livM
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum 1mM remove 2,845,717 - -0.6 2,845,744 + -0.5 2,845,754 + +0.2 2,845,782 + +0.5 2,845,899 + -0.0 2,845,957 - -0.3 2,846,004 + livF DVU2740 0.11 -0.9 2,846,004 + livF DVU2740 0.11 +0.6 2,846,012 - livF DVU2740 0.12 -0.2 2,846,173 - livF DVU2740 0.34 -0.2 2,846,217 + livF DVU2740 0.40 -0.1 2,846,350 + livF DVU2740 0.59 +1.9 2,846,414 - livF DVU2740 0.68 -0.0 2,846,423 + livF DVU2740 0.69 -1.4 2,846,673 + +0.1 2,846,727 + livG DVU2741 0.10 +0.4 2,846,758 + livG DVU2741 0.14 -0.0 2,846,776 + livG DVU2741 0.17 -0.1 2,846,930 + livG DVU2741 0.37 +0.5 2,847,021 - livG DVU2741 0.49 +2.1 2,847,083 - livG DVU2741 0.57 +0.0 2,847,085 + livG DVU2741 0.57 -0.1 2,847,085 + livG DVU2741 0.57 -0.5 2,847,087 + livG DVU2741 0.57 -0.3 2,847,087 + livG DVU2741 0.57 -0.1 2,847,087 + livG DVU2741 0.57 +0.1 2,847,094 - livG DVU2741 0.58 +0.3 2,847,095 - livG DVU2741 0.58 +0.7 2,847,107 - livG DVU2741 0.60 -0.0 2,847,139 + livG DVU2741 0.64 -0.2 2,847,175 - livG DVU2741 0.69 -0.1 2,847,179 + livG DVU2741 0.69 -0.9 2,847,371 - -1.9 2,847,498 + +1.5 2,847,501 - -0.9 2,847,506 - +0.6 2,847,556 + livM DVU2742 0.12 +0.4 2,847,583 + livM DVU2742 0.15 +0.5 2,847,583 + livM DVU2742 0.15 -0.6 2,847,583 + livM DVU2742 0.15 -0.3 2,847,583 + livM DVU2742 0.15 -0.6 2,847,591 - livM DVU2742 0.15 +0.0 2,847,591 - livM DVU2742 0.15 +0.9 2,847,591 - livM DVU2742 0.15 +0.4 2,847,762 + livM DVU2742 0.31 +0.9 2,847,939 + livM DVU2742 0.48 -0.7 2,847,961 + livM DVU2742 0.50 +0.0 2,847,995 + livM DVU2742 0.53 +0.0 2,848,062 - livM DVU2742 0.59 -0.3 2,848,196 - livM DVU2742 0.72 -0.3 2,848,210 - livM DVU2742 0.73 -0.7 2,848,219 + livM DVU2742 0.74 -2.2 2,848,224 + livM DVU2742 0.74 +0.2 2,848,232 - livM DVU2742 0.75 -0.4 2,848,247 - livM DVU2742 0.76 -0.3 2,848,363 + livM DVU2742 0.87 -0.4
Or see this region's nucleotide sequence