Experiment: Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1723 and Pf6N2E2_1724 are separated by 9 nucleotides Pf6N2E2_1724 and Pf6N2E2_1725 are separated by 4 nucleotides Pf6N2E2_1725 and Pf6N2E2_1726 are separated by 244 nucleotides
Pf6N2E2_1723 - Transcriptional regulator, TetR family, at 2,030,562 to 2,031,176
_1723
Pf6N2E2_1724 - DNA-binding response regulator, LuxR family, at 2,031,186 to 2,031,821
_1724
Pf6N2E2_1725 - Sensory box histidine kinase, at 2,031,826 to 2,034,111
_1725
Pf6N2E2_1726 - 3-methylmercaptopropionyl-CoA ligase (DmdB), at 2,034,356 to 2,035,978
_1726
Position (kb)
2031
2032
2033
2034
2035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2030.937 kb on + strand, within Pf6N2E2_1723 at 2031.115 kb on + strand at 2031.116 kb on - strand at 2031.116 kb on - strand at 2031.344 kb on - strand, within Pf6N2E2_1724 at 2031.793 kb on + strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.794 kb on - strand at 2031.827 kb on + strand at 2031.828 kb on - strand at 2031.992 kb on + strand at 2032.238 kb on - strand, within Pf6N2E2_1725 at 2032.251 kb on + strand, within Pf6N2E2_1725 at 2032.251 kb on + strand, within Pf6N2E2_1725 at 2032.251 kb on + strand, within Pf6N2E2_1725 at 2032.252 kb on - strand, within Pf6N2E2_1725 at 2032.451 kb on + strand, within Pf6N2E2_1725 at 2032.452 kb on - strand, within Pf6N2E2_1725 at 2032.452 kb on - strand, within Pf6N2E2_1725 at 2032.472 kb on + strand, within Pf6N2E2_1725 at 2032.473 kb on - strand, within Pf6N2E2_1725 at 2032.634 kb on + strand, within Pf6N2E2_1725 at 2032.635 kb on - strand, within Pf6N2E2_1725 at 2032.754 kb on + strand, within Pf6N2E2_1725 at 2032.755 kb on - strand, within Pf6N2E2_1725 at 2032.871 kb on + strand, within Pf6N2E2_1725 at 2032.871 kb on + strand, within Pf6N2E2_1725 at 2032.872 kb on - strand, within Pf6N2E2_1725 at 2032.872 kb on - strand, within Pf6N2E2_1725 at 2033.018 kb on + strand, within Pf6N2E2_1725 at 2033.019 kb on - strand, within Pf6N2E2_1725 at 2033.060 kb on + strand, within Pf6N2E2_1725 at 2033.061 kb on - strand, within Pf6N2E2_1725 at 2033.061 kb on - strand, within Pf6N2E2_1725 at 2033.677 kb on + strand, within Pf6N2E2_1725 at 2033.678 kb on - strand, within Pf6N2E2_1725 at 2033.954 kb on + strand at 2033.955 kb on - strand at 2033.985 kb on - strand at 2034.147 kb on - strand at 2034.174 kb on - strand at 2034.202 kb on - strand at 2034.203 kb on + strand at 2034.206 kb on - strand at 2034.219 kb on + strand at 2034.220 kb on - strand at 2034.322 kb on + strand at 2034.328 kb on + strand at 2034.328 kb on + strand at 2034.328 kb on + strand at 2034.328 kb on + strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.329 kb on - strand at 2034.332 kb on - strand at 2034.366 kb on - strand at 2034.366 kb on - strand at 2034.503 kb on + strand at 2034.654 kb on + strand, within Pf6N2E2_1726 at 2034.655 kb on - strand, within Pf6N2E2_1726 at 2034.708 kb on + strand, within Pf6N2E2_1726 at 2034.708 kb on + strand, within Pf6N2E2_1726 at 2034.709 kb on - strand, within Pf6N2E2_1726 at 2034.709 kb on - strand, within Pf6N2E2_1726 at 2034.709 kb on - strand, within Pf6N2E2_1726 at 2034.804 kb on - strand, within Pf6N2E2_1726 at 2034.907 kb on - strand, within Pf6N2E2_1726 at 2034.918 kb on - strand, within Pf6N2E2_1726 at 2034.956 kb on + strand, within Pf6N2E2_1726 at 2034.957 kb on - strand, within Pf6N2E2_1726 at 2034.957 kb on - strand, within Pf6N2E2_1726 at 2035.029 kb on - strand, within Pf6N2E2_1726 at 2035.029 kb on - strand, within Pf6N2E2_1726
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 600 mM remove 2,030,937 + Pf6N2E2_1723 0.61 +0.4 2,031,115 + -0.1 2,031,116 - +0.4 2,031,116 - +0.2 2,031,344 - Pf6N2E2_1724 0.25 -2.7 2,031,793 + -0.2 2,031,794 - +0.8 2,031,794 - -0.9 2,031,794 - -0.6 2,031,794 - -2.7 2,031,794 - +0.8 2,031,794 - -0.7 2,031,794 - -0.6 2,031,794 - +0.5 2,031,794 - +1.8 2,031,794 - -2.6 2,031,827 + +0.3 2,031,828 - -3.6 2,031,992 + -2.2 2,032,238 - Pf6N2E2_1725 0.18 -1.9 2,032,251 + Pf6N2E2_1725 0.19 -1.4 2,032,251 + Pf6N2E2_1725 0.19 -0.4 2,032,251 + Pf6N2E2_1725 0.19 -0.3 2,032,252 - Pf6N2E2_1725 0.19 -0.3 2,032,451 + Pf6N2E2_1725 0.27 +1.6 2,032,452 - Pf6N2E2_1725 0.27 -1.0 2,032,452 - Pf6N2E2_1725 0.27 -1.2 2,032,472 + Pf6N2E2_1725 0.28 -0.7 2,032,473 - Pf6N2E2_1725 0.28 -2.6 2,032,634 + Pf6N2E2_1725 0.35 +1.1 2,032,635 - Pf6N2E2_1725 0.35 -0.3 2,032,754 + Pf6N2E2_1725 0.41 -0.4 2,032,755 - Pf6N2E2_1725 0.41 -0.6 2,032,871 + Pf6N2E2_1725 0.46 -1.7 2,032,871 + Pf6N2E2_1725 0.46 -0.0 2,032,872 - Pf6N2E2_1725 0.46 -1.9 2,032,872 - Pf6N2E2_1725 0.46 -1.4 2,033,018 + Pf6N2E2_1725 0.52 -0.9 2,033,019 - Pf6N2E2_1725 0.52 +0.7 2,033,060 + Pf6N2E2_1725 0.54 +1.1 2,033,061 - Pf6N2E2_1725 0.54 +1.2 2,033,061 - Pf6N2E2_1725 0.54 -0.6 2,033,677 + Pf6N2E2_1725 0.81 +0.7 2,033,678 - Pf6N2E2_1725 0.81 -1.2 2,033,954 + +1.3 2,033,955 - -1.0 2,033,985 - -1.9 2,034,147 - +0.4 2,034,174 - +0.5 2,034,202 - +1.1 2,034,203 + -0.0 2,034,206 - -2.4 2,034,219 + +0.5 2,034,220 - +1.9 2,034,322 + -2.8 2,034,328 + -1.1 2,034,328 + +0.8 2,034,328 + -1.2 2,034,328 + +1.3 2,034,329 - -0.5 2,034,329 - +1.3 2,034,329 - -0.7 2,034,329 - +0.0 2,034,329 - -0.3 2,034,332 - -1.7 2,034,366 - +1.1 2,034,366 - +1.4 2,034,503 + -1.4 2,034,654 + Pf6N2E2_1726 0.18 -1.9 2,034,655 - Pf6N2E2_1726 0.18 +0.7 2,034,708 + Pf6N2E2_1726 0.22 -1.5 2,034,708 + Pf6N2E2_1726 0.22 +1.4 2,034,709 - Pf6N2E2_1726 0.22 +1.1 2,034,709 - Pf6N2E2_1726 0.22 +1.2 2,034,709 - Pf6N2E2_1726 0.22 +0.7 2,034,804 - Pf6N2E2_1726 0.28 -0.1 2,034,907 - Pf6N2E2_1726 0.34 -0.3 2,034,918 - Pf6N2E2_1726 0.35 -2.2 2,034,956 + Pf6N2E2_1726 0.37 +1.9 2,034,957 - Pf6N2E2_1726 0.37 +0.2 2,034,957 - Pf6N2E2_1726 0.37 +1.9 2,035,029 - Pf6N2E2_1726 0.41 +0.6 2,035,029 - Pf6N2E2_1726 0.41 +0.3
Or see this region's nucleotide sequence