Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0174 and Psyr_0175 are separated by 90 nucleotides Psyr_0175 and Psyr_0176 are separated by 216 nucleotides Psyr_0176 and Psyr_0177 are separated by 182 nucleotides
Psyr_0174: Psyr_0174 - Sodium:dicarboxylate symporter, at 188,229 to 189,560
_0174
Psyr_0175: Psyr_0175 - conserved hypothetical protein, at 189,651 to 189,926
_0175
Psyr_0176: Psyr_0176 - conserved hypothetical protein, at 190,143 to 190,391
_0176
Psyr_0177: Psyr_0177 - adenylate cyclase, at 190,574 to 193,420
_0177
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 189.150 kb on + strand, within Psyr_0174 at 189.345 kb on - strand, within Psyr_0174 at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.468 kb on + strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.469 kb on - strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.568 kb on + strand at 189.569 kb on - strand at 189.636 kb on - strand at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.783 kb on + strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.784 kb on - strand, within Psyr_0175 at 189.879 kb on + strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.880 kb on - strand, within Psyr_0175 at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.954 kb on + strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.955 kb on - strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.956 kb on + strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.957 kb on - strand at 189.958 kb on - strand at 189.983 kb on + strand at 189.984 kb on - strand at 189.984 kb on - strand at 190.116 kb on + strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.117 kb on - strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.119 kb on + strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.120 kb on - strand at 190.123 kb on - strand at 190.123 kb on - strand at 190.123 kb on - strand at 190.138 kb on + strand at 190.138 kb on + strand at 190.139 kb on - strand at 190.139 kb on - strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.142 kb on + strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.143 kb on - strand at 190.149 kb on + strand at 190.150 kb on - strand at 190.150 kb on - strand at 190.150 kb on - strand at 190.150 kb on - strand at 190.150 kb on - strand at 190.234 kb on + strand, within Psyr_0176 at 190.583 kb on - strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.696 kb on + strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.697 kb on - strand at 190.773 kb on - strand at 190.865 kb on + strand, within Psyr_0177 at 190.865 kb on + strand, within Psyr_0177 at 190.865 kb on + strand, within Psyr_0177 at 190.866 kb on - strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.156 kb on + strand, within Psyr_0177 at 191.157 kb on - strand, within Psyr_0177 at 191.157 kb on - strand, within Psyr_0177 at 191.177 kb on + strand, within Psyr_0177 at 191.189 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.235 kb on - strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.249 kb on + strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.250 kb on - strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.258 kb on + strand, within Psyr_0177 at 191.259 kb on - strand, within Psyr_0177 at 191.259 kb on - strand, within Psyr_0177 at 191.259 kb on - strand, within Psyr_0177
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 189,150 + Psyr_0174 0.69 -2.2 189,345 - Psyr_0174 0.84 -0.0 189,468 + -0.6 189,468 + -1.3 189,468 + +0.9 189,468 + -2.0 189,468 + +0.4 189,468 + +0.4 189,468 + -0.1 189,468 + -0.4 189,468 + -0.6 189,468 + -0.4 189,468 + -1.0 189,469 - +1.3 189,469 - +0.7 189,469 - -1.4 189,469 - -1.2 189,469 - +2.0 189,469 - +0.1 189,469 - -1.4 189,469 - +0.0 189,469 - +0.0 189,469 - +1.2 189,469 - +0.1 189,469 - +0.6 189,469 - -1.7 189,568 + -0.8 189,568 + +0.4 189,568 + +1.2 189,569 - +1.5 189,636 - -0.5 189,783 + Psyr_0175 0.48 -2.7 189,783 + Psyr_0175 0.48 +0.4 189,783 + Psyr_0175 0.48 -0.1 189,783 + Psyr_0175 0.48 -0.8 189,783 + Psyr_0175 0.48 +2.8 189,783 + Psyr_0175 0.48 -0.3 189,783 + Psyr_0175 0.48 -2.5 189,783 + Psyr_0175 0.48 -0.2 189,783 + Psyr_0175 0.48 -0.4 189,784 - Psyr_0175 0.48 -0.0 189,784 - Psyr_0175 0.48 -0.4 189,784 - Psyr_0175 0.48 +0.6 189,784 - Psyr_0175 0.48 +0.6 189,784 - Psyr_0175 0.48 -1.5 189,784 - Psyr_0175 0.48 +0.6 189,784 - Psyr_0175 0.48 -0.4 189,879 + Psyr_0175 0.83 +0.5 189,880 - Psyr_0175 0.83 +2.1 189,880 - Psyr_0175 0.83 +3.9 189,880 - Psyr_0175 0.83 -0.6 189,880 - Psyr_0175 0.83 +0.2 189,954 + -0.6 189,954 + -0.4 189,954 + +2.3 189,954 + +2.9 189,954 + -1.7 189,954 + +0.0 189,954 + +1.1 189,954 + +0.2 189,954 + -1.4 189,954 + -1.3 189,954 + -0.0 189,954 + -1.3 189,954 + +0.8 189,954 + +2.6 189,954 + -0.3 189,954 + -2.1 189,955 - -0.5 189,955 - +0.9 189,955 - -0.9 189,955 - -0.1 189,955 - +0.1 189,955 - -0.5 189,955 - -0.8 189,955 - -0.1 189,955 - +0.7 189,955 - +0.7 189,955 - +0.3 189,955 - +0.3 189,955 - +0.2 189,955 - -0.6 189,956 + -1.0 189,956 + -0.2 189,956 + -0.0 189,956 + -0.3 189,956 + -1.2 189,956 + -1.1 189,956 + +0.2 189,956 + -0.7 189,956 + +2.0 189,956 + +2.3 189,956 + -0.0 189,956 + -0.4 189,956 + +0.2 189,956 + -1.7 189,956 + +0.9 189,956 + -0.5 189,956 + -1.2 189,957 - +0.2 189,957 - +0.7 189,957 - -1.7 189,957 - -1.4 189,957 - -1.1 189,957 - -0.3 189,957 - +1.0 189,957 - -1.0 189,957 - -0.6 189,957 - -0.5 189,957 - +0.9 189,957 - +0.1 189,957 - -1.7 189,957 - -0.5 189,957 - +0.0 189,957 - -0.5 189,957 - -0.2 189,957 - -1.0 189,957 - -1.4 189,957 - -1.7 189,957 - -0.9 189,957 - -0.4 189,958 - -0.1 189,983 + -0.2 189,984 - -0.6 189,984 - +0.2 190,116 + +1.6 190,117 - +0.4 190,117 - +0.6 190,117 - -0.4 190,119 + -1.0 190,119 + +0.1 190,119 + +0.3 190,119 + -0.1 190,119 + -1.0 190,120 - +2.9 190,120 - +0.5 190,120 - -0.5 190,123 - +0.3 190,123 - -0.4 190,123 - -1.1 190,138 + +0.4 190,138 + -0.6 190,139 - -0.8 190,139 - +0.6 190,142 + +0.9 190,142 + +0.7 190,142 + -0.7 190,142 + +0.2 190,142 + +0.3 190,142 + +0.5 190,142 + +0.2 190,143 - -0.1 190,143 - -1.0 190,143 - -0.3 190,143 - +0.0 190,143 - +0.8 190,143 - -1.3 190,143 - +3.3 190,143 - +0.2 190,143 - +0.1 190,143 - -0.6 190,143 - +0.5 190,143 - -1.9 190,143 - +0.7 190,149 + +0.1 190,150 - -0.6 190,150 - +0.5 190,150 - -0.2 190,150 - -1.9 190,150 - +2.1 190,234 + Psyr_0176 0.37 +1.0 190,583 - -0.2 190,696 + -0.2 190,696 + +0.5 190,696 + -1.1 190,696 + -1.6 190,696 + +2.3 190,697 - -0.5 190,697 - +1.7 190,697 - -0.2 190,697 - +2.4 190,697 - -0.0 190,697 - +0.7 190,697 - +2.5 190,773 - -0.6 190,865 + Psyr_0177 0.10 -2.2 190,865 + Psyr_0177 0.10 -1.6 190,865 + Psyr_0177 0.10 -1.0 190,866 - Psyr_0177 0.10 -0.3 191,156 + Psyr_0177 0.20 -0.6 191,156 + Psyr_0177 0.20 -0.5 191,156 + Psyr_0177 0.20 +1.1 191,156 + Psyr_0177 0.20 -1.2 191,156 + Psyr_0177 0.20 +0.1 191,156 + Psyr_0177 0.20 -0.7 191,157 - Psyr_0177 0.20 +0.5 191,157 - Psyr_0177 0.20 -0.6 191,177 + Psyr_0177 0.21 -0.2 191,189 - Psyr_0177 0.22 -0.9 191,235 - Psyr_0177 0.23 -0.7 191,235 - Psyr_0177 0.23 +0.8 191,235 - Psyr_0177 0.23 +0.8 191,235 - Psyr_0177 0.23 -0.0 191,249 + Psyr_0177 0.24 -0.3 191,249 + Psyr_0177 0.24 +0.5 191,249 + Psyr_0177 0.24 +0.9 191,249 + Psyr_0177 0.24 +0.8 191,249 + Psyr_0177 0.24 -1.3 191,249 + Psyr_0177 0.24 -0.8 191,250 - Psyr_0177 0.24 +1.1 191,250 - Psyr_0177 0.24 +0.2 191,250 - Psyr_0177 0.24 +0.3 191,258 + Psyr_0177 0.24 -0.2 191,258 + Psyr_0177 0.24 +0.6 191,258 + Psyr_0177 0.24 -0.4 191,259 - Psyr_0177 0.24 +0.0 191,259 - Psyr_0177 0.24 -0.3 191,259 - Psyr_0177 0.24 -0.8
Or see this region's nucleotide sequence