Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4643

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,506,075	+		Psyr_4642	0.70	+0.5
5,506,254	+		Psyr_4642	0.77	+1.8
5,506,254	+		Psyr_4642	0.77	-0.2
5,506,254	+		Psyr_4642	0.77	+1.3
5,506,254	+		Psyr_4642	0.77	-0.7
5,506,254	+		Psyr_4642	0.77	+0.5
5,506,254	+		Psyr_4642	0.77	+1.1
5,506,254	+		Psyr_4642	0.77	-0.8
5,506,254	+		Psyr_4642	0.77	-2.9
5,506,255	-		Psyr_4642	0.77	+1.2
5,506,256	+		Psyr_4642	0.77	+0.9
5,506,256	+		Psyr_4642	0.77	-1.9
5,506,256	+		Psyr_4642	0.77	-1.7
5,506,256	+		Psyr_4642	0.77	+0.7
5,506,257	-		Psyr_4642	0.77	+0.6
5,506,257	-		Psyr_4642	0.77	+1.9
5,506,257	-		Psyr_4642	0.77	-0.5
5,506,257	-		Psyr_4642	0.77	-1.7
5,506,257	-		Psyr_4642	0.77	+2.6
5,506,257	-		Psyr_4642	0.77	-1.1
5,506,257	-		Psyr_4642	0.77	-0.1
5,506,516	+		Psyr_4642	0.88	+2.0
5,506,517	-		Psyr_4642	0.88	+0.3
5,506,517	-		Psyr_4642	0.88	+2.1
5,506,720	+				+0.3
5,506,720	+				+1.3
5,506,720	+				+2.9
5,506,721	-				-2.3
5,506,721	-				+1.5
5,506,820	+				+2.6
5,506,822	+				-1.9
5,506,973	-				+1.3
5,506,973	-				-0.0
5,506,989	+				+0.4
5,506,989	+				+0.2
5,506,989	+				-1.8
5,507,004	+				+0.6
5,507,004	+				+1.2
5,507,005	-				-0.5
5,507,005	-				+0.5
5,507,005	-				+0.1
5,507,033	-				-1.9
5,507,049	-				+1.2
5,507,084	-				+1.6
5,507,084	-				+0.7
5,507,086	-				-1.4
5,507,086	-				+1.1
5,507,104	+				+0.1
5,507,104	+				-0.4
5,507,104	+				+1.3
5,507,105	-				-0.8
5,507,110	+				-1.1
5,507,111	-				-0.4
5,507,111	-				-0.8
5,507,245	+		Psyr_4643	0.21	+0.3
5,507,245	+		Psyr_4643	0.21	+0.7
5,507,246	-		Psyr_4643	0.21	+0.5
5,507,246	-		Psyr_4643	0.21	-0.5
5,507,246	-		Psyr_4643	0.21	-1.5
5,507,256	+		Psyr_4643	0.22	+1.7
5,507,256	+		Psyr_4643	0.22	-0.4
5,507,256	+		Psyr_4643	0.22	+0.8
5,507,256	+		Psyr_4643	0.22	-1.5
5,507,256	+		Psyr_4643	0.22	-2.6
5,507,256	+		Psyr_4643	0.22	-2.1
5,507,256	+		Psyr_4643	0.22	-2.0
5,507,256	+		Psyr_4643	0.22	+0.7
5,507,256	+		Psyr_4643	0.22	-0.9
5,507,256	+		Psyr_4643	0.22	+0.3
5,507,257	-		Psyr_4643	0.22	+0.5
5,507,257	-		Psyr_4643	0.22	-2.6
5,507,257	-		Psyr_4643	0.22	-2.8
5,507,259	+		Psyr_4643	0.22	+1.9
5,507,260	-		Psyr_4643	0.22	-0.8
5,507,260	-		Psyr_4643	0.22	-2.2
5,507,260	-		Psyr_4643	0.22	-0.7
5,507,260	-		Psyr_4643	0.22	+0.0
5,507,269	+		Psyr_4643	0.23	+0.3
5,507,270	-		Psyr_4643	0.23	-1.8
5,507,270	-		Psyr_4643	0.23	-1.1
5,507,270	-		Psyr_4643	0.23	-2.0
5,507,317	+		Psyr_4643	0.28	-0.3
5,507,343	+		Psyr_4643	0.31	+0.1
5,507,343	+		Psyr_4643	0.31	-0.8
5,507,344	-		Psyr_4643	0.31	+0.2
5,507,344	-		Psyr_4643	0.31	-2.3
5,507,344	-		Psyr_4643	0.31	+0.4
5,507,344	-		Psyr_4643	0.31	-0.5
5,507,378	+		Psyr_4643	0.34	+0.2
5,507,379	-		Psyr_4643	0.35	-1.9
5,507,383	+		Psyr_4643	0.35	-0.1
5,507,383	+		Psyr_4643	0.35	-0.4
5,507,383	+		Psyr_4643	0.35	+0.3
5,507,383	+		Psyr_4643	0.35	-1.6
5,507,384	-		Psyr_4643	0.35	+0.8
5,507,384	-		Psyr_4643	0.35	+1.7
5,507,384	-		Psyr_4643	0.35	+0.1
5,507,384	-		Psyr_4643	0.35	+0.7
5,507,384	-		Psyr_4643	0.35	-2.9
5,507,384	-		Psyr_4643	0.35	-1.5
5,507,384	-		Psyr_4643	0.35	-0.8
5,507,384	-		Psyr_4643	0.35	+1.1
5,507,384	-		Psyr_4643	0.35	-0.8
5,507,389	+		Psyr_4643	0.36	+1.1
5,507,389	+		Psyr_4643	0.36	-2.4
5,507,390	-		Psyr_4643	0.36	-1.2
5,507,390	-		Psyr_4643	0.36	+2.5
5,507,410	+		Psyr_4643	0.38	+1.1
5,507,411	-		Psyr_4643	0.38	-1.5
5,507,434	+		Psyr_4643	0.40	-0.9
5,507,489	+		Psyr_4643	0.46	-0.9
5,507,490	-		Psyr_4643	0.46	+3.3
5,507,537	+		Psyr_4643	0.51	+0.8
5,507,538	-		Psyr_4643	0.51	+0.4
5,507,538	-		Psyr_4643	0.51	-3.0
5,507,543	-		Psyr_4643	0.51	+1.1
5,507,543	-		Psyr_4643	0.51	-0.5
5,507,543	-		Psyr_4643	0.51	+0.5
5,507,584	+		Psyr_4643	0.56	-0.1
5,507,584	+		Psyr_4643	0.56	-2.6
5,507,584	+		Psyr_4643	0.56	-1.9
5,507,585	-		Psyr_4643	0.56	-0.3
5,507,619	-		Psyr_4643	0.59	-1.1
5,507,663	+		Psyr_4643	0.64	+0.6
5,507,663	+		Psyr_4643	0.64	-0.2
5,507,663	+		Psyr_4643	0.64	+1.7
5,507,664	-		Psyr_4643	0.64	-0.9
5,507,673	+		Psyr_4643	0.65	-2.1
5,507,760	+		Psyr_4643	0.74	-1.1
5,507,760	+		Psyr_4643	0.74	-1.7
5,507,839	+		Psyr_4643	0.82	+0.6
5,507,839	+		Psyr_4643	0.82	+0.2
5,507,839	+		Psyr_4643	0.82	-0.6
5,507,840	-		Psyr_4643	0.82	-1.9
5,507,840	-		Psyr_4643	0.82	+0.4
5,507,840	-		Psyr_4643	0.82	+0.6
5,507,909	+		Psyr_4643	0.89	-1.2
5,507,920	+				-1.6
5,507,920	+				-1.3
5,507,920	+				-0.8
5,507,954	+				+1.0
5,507,954	+				+0.4
5,507,954	+				+1.2
5,507,955	-				-1.5
5,507,955	-				-1.6
5,508,002	+				-0.7
5,508,002	+				-0.8
5,508,013	-				-0.5
5,508,013	-				-1.0
5,508,016	+				-0.2
5,508,016	+				+1.0
5,508,016	+				-0.1
5,508,017	-				+0.8
5,508,052	-				-1.5
5,508,064	+				-0.6
5,508,099	+				-2.6
5,508,099	+				-1.5
5,508,099	+				-0.1
5,508,100	-				+0.0
5,508,100	-				+0.7
5,508,100	-				-0.6
5,508,102	+				-1.3
5,508,103	-				+2.0
5,508,137	+				+1.2
5,508,150	-				+2.8
5,508,150	-				+0.8
5,508,150	-				-1.6
5,508,153	+				+2.5
5,508,153	+				+1.5
5,508,153	+				-1.4
5,508,153	+				+0.7
5,508,153	+				-1.8
5,508,153	+				+0.2
5,508,153	+				-3.1
5,508,153	+				+2.6
5,508,153	+				+0.1
5,508,153	+				+2.1
5,508,154	-				-2.9
5,508,154	-				-1.5
5,508,154	-				+1.1
5,508,154	-				-0.1
5,508,177	-				+1.2
5,508,177	-				-1.9
5,508,299	+				+2.3
5,508,299	+				+1.1
5,508,300	-				+3.0
5,508,300	-				-0.3
5,508,300	-				+2.3
5,508,300	-				-0.2
5,508,300	-				-0.1
5,508,303	+				-0.7
5,508,303	+				-1.5
5,508,303	+				+1.2
5,508,303	+				+2.0
5,508,304	-				-0.1
5,508,304	-				-0.5
5,508,304	-				+1.7
5,508,304	-				-3.8
5,508,344	+				+1.4
5,508,404	+				+1.0
5,508,461	+				+3.2
5,508,461	+				-0.1
5,508,487	+				+0.8
5,508,487	+				+0.8
5,508,487	+				+0.7
5,508,488	-				-0.8
5,508,488	-				-0.1
5,508,488	-				-0.7
5,508,551	+				-3.1
5,508,551	+				+0.7
5,508,552	-				-3.5
5,508,552	-				-0.3
5,508,580	+				+0.2
5,508,580	+				+0.7
5,508,580	+				+0.7
5,508,580	+				+0.9
5,508,580	+				+1.2
5,508,580	+				-0.9
5,508,580	+				-1.2
5,508,581	-				-2.5
5,508,581	-				+0.8
5,508,581	-				-0.7
5,508,623	-				+1.4
5,508,657	+				+0.5
5,508,657	+				+1.7
5,508,657	+				+0.3
5,508,658	-				+0.1
5,508,658	-				-2.4
5,508,659	+				-2.6
5,508,659	+				-1.6
5,508,659	+				-0.1
5,508,659	+				-2.6
5,508,659	+				+1.2
5,508,659	+				+1.5
5,508,659	+				+1.0
5,508,659	+				+0.1
5,508,659	+				+0.3
5,508,659	+				+0.1
5,508,659	+				+0.6
5,508,659	+				-0.6
5,508,659	+				-1.3
5,508,659	+				+0.1
5,508,659	+				+1.0
5,508,659	+				-0.5
5,508,659	+				+0.8
5,508,659	+				-1.2
5,508,659	+				+1.8
5,508,659	+				-1.0
5,508,659	+				+1.6
5,508,659	+				-0.5
5,508,659	+				-0.1
5,508,660	-				-0.3
5,508,660	-				-0.1
5,508,660	-				+0.4
5,508,660	-				+1.6
5,508,660	-				-1.6
5,508,660	-				-1.8
5,508,660	-				+1.3
5,508,660	-				+1.3
5,508,660	-				-2.9
5,508,660	-				+0.3
5,508,660	-				-0.8
5,508,660	-				+1.4
5,508,660	-				+0.1
5,508,660	-				+1.6
5,508,660	-				-0.3
5,508,660	-				-1.9
5,508,660	-				+1.8
5,508,660	-				+1.4
5,508,660	-				+0.8
5,508,660	-				-0.5
5,508,660	-				+2.3
5,508,660	-				+1.5
5,508,660	-				-2.2
5,508,660	-				+0.9
5,508,660	-				-0.2
5,508,660	-				+2.0
5,508,660	-				+1.5
5,508,660	-				-0.3
5,508,660	-				+0.2
5,508,660	-				-0.2
5,508,660	-				-0.2
5,508,660	-				-0.9
5,508,660	-				-1.5
5,508,665	+				-0.8
5,508,665	+				-0.2
5,508,665	+				+0.4
5,508,665	+				-1.3
5,508,665	+				+0.4
5,508,665	+				-0.1
5,508,665	+				+0.8
5,508,665	+				-2.7
5,508,665	+				+0.8
5,508,665	+				+1.3
5,508,665	+				+2.6
5,508,665	+				-0.5
5,508,665	+				-0.2
5,508,665	+				+0.6
5,508,665	+				-0.8
5,508,665	+				-0.4
5,508,665	+				+2.1
5,508,665	+				-1.5
5,508,665	+				-1.2
5,508,665	+				+2.1
5,508,666	-				-1.3
5,508,666	-				+1.5
5,508,666	-				-3.1
5,508,666	-				-1.4
5,508,666	-				-1.5
5,508,666	-				-2.3
5,508,666	-				-0.1
5,508,666	-				+2.9
5,508,666	-				+1.7
5,508,666	-				-0.7
5,508,666	-				-0.5
5,508,666	-				+1.4
5,508,667	+				+0.2
5,508,667	+				-1.6
5,508,667	+				+0.7
5,508,667	+				-1.1
5,508,667	+				-2.2
5,508,667	+				-0.4
5,508,668	-				+2.5
5,508,668	-				+0.9
5,508,668	-				-1.1
5,508,668	-				-0.8
5,508,668	-				+1.9
5,508,669	+				+1.4
5,508,669	+				-0.2
5,508,669	+				-0.4
5,508,669	+				-0.1
5,508,669	+				-0.0
5,508,669	+				+2.7
5,508,669	+				+1.5
5,508,670	-				+2.4
5,508,670	-				-1.2
5,508,670	-				-3.5
5,508,670	-				+0.9
5,508,686	+				-0.7
5,508,720	+		Psyr_4644	0.16	-0.2
5,508,721	-		Psyr_4644	0.16	-2.2
5,508,725	-		Psyr_4644	0.17	+0.9
5,508,725	-		Psyr_4644	0.17	+2.2
5,508,725	-		Psyr_4644	0.17	-0.7
5,508,751	+		Psyr_4644	0.25	+3.6
5,508,751	+		Psyr_4644	0.25	-0.3
5,508,751	+		Psyr_4644	0.25	+0.6
5,508,751	+		Psyr_4644	0.25	+1.5
5,508,751	+		Psyr_4644	0.25	+0.8
5,508,751	+		Psyr_4644	0.25	-1.1
5,508,751	+		Psyr_4644	0.25	-0.5
5,508,751	+		Psyr_4644	0.25	-1.6
5,508,751	+		Psyr_4644	0.25	+2.4
5,508,751	+		Psyr_4644	0.25	+0.8
5,508,751	+				-1.6
5,508,751	+		Psyr_4644	0.25	-2.8
5,508,751	+		Psyr_4644	0.25	-2.5
5,508,751	+		Psyr_4644	0.25	+0.5
5,508,752	-		Psyr_4644	0.25	+0.7
5,508,752	-		Psyr_4644	0.25	+0.0
5,508,752	-		Psyr_4644	0.25	+0.0
5,508,752	-		Psyr_4644	0.25	+0.7
5,508,752	-		Psyr_4644	0.25	+0.1
5,508,752	-		Psyr_4644	0.25	-1.5
5,508,752	-		Psyr_4644	0.25	-1.3
5,508,752	-		Psyr_4644	0.25	-3.0
5,508,752	-		Psyr_4644	0.25	+0.9
5,508,754	-		Psyr_4644	0.26	-2.9
5,508,776	+		Psyr_4644	0.32	+0.8
5,508,777	-		Psyr_4644	0.32	+1.4
5,508,820	+		Psyr_4644	0.44	+1.3
5,508,821	-		Psyr_4644	0.45	+1.3
5,508,868	-		Psyr_4644	0.58	-1.6
5,508,903	+		Psyr_4644	0.68	-1.5
5,508,904	-		Psyr_4644	0.68	+0.1
5,508,904	-		Psyr_4644	0.68	-0.8
5,508,904	-		Psyr_4644	0.68	+0.1
5,508,904	-		Psyr_4644	0.68	+1.0
5,508,907	+		Psyr_4644	0.69	-1.4
5,508,907	+		Psyr_4644	0.69	-0.3
5,508,907	+		Psyr_4644	0.69	-1.6
5,508,907	+		Psyr_4644	0.69	-3.2
5,508,907	+		Psyr_4644	0.69	-0.1
5,508,907	+		Psyr_4644	0.69	+1.5
5,508,907	+		Psyr_4644	0.69	+1.2
5,508,907	+		Psyr_4644	0.69	-1.5
5,508,907	+		Psyr_4644	0.69	-0.1
5,508,907	+		Psyr_4644	0.69	+1.1
5,508,907	+				-0.1
5,508,907	+		Psyr_4644	0.69	-0.8
5,508,907	+		Psyr_4644	0.69	+0.2
5,508,908	-		Psyr_4644	0.70	-1.6
5,508,908	-		Psyr_4644	0.70	+0.8
5,508,908	-		Psyr_4644	0.70	-2.2
5,508,908	-		Psyr_4644	0.70	-0.5
5,508,908	-		Psyr_4644	0.70	+0.5
5,508,908	-		Psyr_4644	0.70	-2.0
5,508,908	-		Psyr_4644	0.70	-0.8
5,508,908	-		Psyr_4644	0.70	-0.3
5,508,908	-		Psyr_4644	0.70	+1.2
5,508,908	-		Psyr_4644	0.70	+0.9
5,508,908	-		Psyr_4644	0.70	+3.6
5,508,908	-		Psyr_4644	0.70	-1.9
5,508,908	-		Psyr_4644	0.70	-2.3
5,508,908	-		Psyr_4644	0.70	+0.3
5,508,908	-		Psyr_4644	0.70	-2.7
5,508,908	-		Psyr_4644	0.70	-0.8
5,508,908	-		Psyr_4644	0.70	+1.9
5,508,908	-		Psyr_4644	0.70	-0.2
5,508,908	-		Psyr_4644	0.70	+0.0
5,508,908	-		Psyr_4644	0.70	-0.0
5,508,908	-		Psyr_4644	0.70	-1.6
5,508,908	-		Psyr_4644	0.70	-1.7
5,508,909	+		Psyr_4644	0.70	-2.1
5,508,909	+		Psyr_4644	0.70	+1.1
5,508,909	+		Psyr_4644	0.70	-0.1
5,508,909	+		Psyr_4644	0.70	+0.3
5,508,909	+		Psyr_4644	0.70	+1.8
5,508,909	+		Psyr_4644	0.70	-1.0
5,508,909	+		Psyr_4644	0.70	-1.5
5,508,910	-		Psyr_4644	0.70	-1.3
5,508,910	-		Psyr_4644	0.70	+1.1
5,508,910	-		Psyr_4644	0.70	+0.9
5,508,910	-		Psyr_4644	0.70	+1.3
5,508,910	-		Psyr_4644	0.70	+0.8
5,508,910	-		Psyr_4644	0.70	+0.6
5,508,910	-		Psyr_4644	0.70	-2.3
5,508,910	-		Psyr_4644	0.70	+0.0
5,508,910	-		Psyr_4644	0.70	-1.2
5,508,910	-		Psyr_4644	0.70	-0.2
5,509,008	+				-0.7
5,509,009	-				-0.7
5,509,009	-				+1.1
5,509,009	-				-1.2
5,509,009	-				-0.3