Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0638 and Psyr_0639 are separated by 84 nucleotides Psyr_0639 and Psyr_0640 are separated by 18 nucleotides Psyr_0640 and Psyr_0641 are separated by 19 nucleotides Psyr_0641 and Psyr_0642 overlap by 4 nucleotides
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603
_0639
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029
_0641
Psyr_0642: Psyr_0642 - conserved hypothetical protein, at 730,026 to 730,331
_0642
Position (kb) 728
729
730 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 727.809 kb on + strand, within Psyr_0638 at 727.834 kb on - strand, within Psyr_0638 at 727.982 kb on + strand at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.285 kb on - strand, within Psyr_0639 at 728.591 kb on + strand at 728.636 kb on - strand at 728.789 kb on - strand, within Psyr_0640 at 728.789 kb on - strand, within Psyr_0640 at 728.845 kb on + strand, within Psyr_0640 at 728.872 kb on + strand, within Psyr_0640 at 728.873 kb on - strand, within Psyr_0640 at 728.875 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.885 kb on - strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.179 kb on - strand, within Psyr_0640 at 729.182 kb on + strand, within Psyr_0640 at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.241 kb on - strand at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.419 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.707 kb on + strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.708 kb on - strand, within Psyr_0641 at 729.896 kb on - strand, within Psyr_0641 at 729.943 kb on + strand, within Psyr_0641 at 729.977 kb on + strand at 729.977 kb on + strand at 729.978 kb on - strand at 729.978 kb on - strand at 730.117 kb on + strand, within Psyr_0642 at 730.117 kb on + strand, within Psyr_0642 at 730.206 kb on + strand, within Psyr_0642 at 730.206 kb on + strand, within Psyr_0642 at 730.206 kb on + strand, within Psyr_0642 at 730.207 kb on - strand, within Psyr_0642
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 727,809 + Psyr_0638 0.76 +1.0 727,834 - Psyr_0638 0.80 -0.0 727,982 + -0.4 728,180 + Psyr_0639 0.25 +0.9 728,180 + Psyr_0639 0.25 -0.4 728,180 + Psyr_0639 0.25 +0.1 728,181 - Psyr_0639 0.25 -0.2 728,181 - Psyr_0639 0.25 -0.3 728,181 - Psyr_0639 0.25 +0.7 728,206 + Psyr_0639 0.30 +1.6 728,206 + Psyr_0639 0.30 -2.3 728,206 - Psyr_0639 0.30 -0.7 728,207 - Psyr_0639 0.30 -0.5 728,207 - Psyr_0639 0.30 +0.3 728,284 + Psyr_0639 0.44 -1.6 728,284 + Psyr_0639 0.44 -0.4 728,285 - Psyr_0639 0.44 +0.2 728,591 + -0.1 728,636 - +0.8 728,789 - Psyr_0640 0.26 +0.5 728,789 - Psyr_0640 0.26 -0.9 728,845 + Psyr_0640 0.35 +1.2 728,872 + Psyr_0640 0.39 -0.2 728,873 - Psyr_0640 0.39 +0.2 728,875 + Psyr_0640 0.40 +0.6 728,884 + Psyr_0640 0.41 +1.5 728,884 + Psyr_0640 0.41 +0.3 728,885 - Psyr_0640 0.41 +0.8 728,938 + Psyr_0640 0.49 +1.3 728,938 + Psyr_0640 0.49 +0.3 728,938 + Psyr_0640 0.49 +0.6 728,939 - Psyr_0640 0.50 +1.1 728,939 - Psyr_0640 0.50 +0.0 728,939 - Psyr_0640 0.50 -0.9 729,178 + Psyr_0640 0.87 +2.9 729,178 + Psyr_0640 0.87 -0.5 729,179 - Psyr_0640 0.87 +0.8 729,182 + Psyr_0640 0.88 +0.5 729,240 + +1.7 729,240 + +0.0 729,240 + -0.7 729,240 + -0.7 729,241 - -0.4 729,407 + Psyr_0641 0.17 +0.0 729,407 + Psyr_0641 0.17 -0.2 729,407 + Psyr_0641 0.17 -1.5 729,407 + Psyr_0641 0.17 -1.2 729,407 + Psyr_0641 0.17 +0.1 729,407 + Psyr_0641 0.17 +0.4 729,407 + Psyr_0641 0.17 +0.1 729,407 + Psyr_0641 0.17 -0.4 729,407 + Psyr_0641 0.17 +0.2 729,407 + Psyr_0641 0.17 -0.7 729,407 + Psyr_0641 0.17 -0.0 729,407 + Psyr_0641 0.17 -0.6 729,407 + Psyr_0641 0.17 -0.4 729,408 - Psyr_0641 0.17 -1.1 729,408 - Psyr_0641 0.17 -1.1 729,408 - Psyr_0641 0.17 -1.1 729,408 - Psyr_0641 0.17 +0.4 729,408 - Psyr_0641 0.17 -0.5 729,408 - Psyr_0641 0.17 +0.1 729,408 - Psyr_0641 0.17 -1.6 729,419 - Psyr_0641 0.19 -1.5 729,597 - Psyr_0641 0.42 +2.0 729,597 - Psyr_0641 0.42 -2.0 729,707 + Psyr_0641 0.57 +0.5 729,707 + Psyr_0641 0.57 +0.7 729,707 + Psyr_0641 0.57 -0.1 729,707 + Psyr_0641 0.57 +0.4 729,707 + Psyr_0641 0.57 -1.6 729,707 + Psyr_0641 0.57 +1.0 729,707 + Psyr_0641 0.57 -0.6 729,707 + Psyr_0641 0.57 -1.2 729,707 + Psyr_0641 0.57 -1.3 729,707 + Psyr_0641 0.57 +0.0 729,707 + Psyr_0641 0.57 +1.1 729,707 + Psyr_0641 0.57 +0.8 729,707 + Psyr_0641 0.57 -0.8 729,708 - Psyr_0641 0.57 -1.4 729,708 - Psyr_0641 0.57 +0.1 729,708 - Psyr_0641 0.57 -1.1 729,708 - Psyr_0641 0.57 +0.5 729,708 - Psyr_0641 0.57 -1.4 729,708 - Psyr_0641 0.57 -0.9 729,708 - Psyr_0641 0.57 -0.7 729,708 - Psyr_0641 0.57 +1.4 729,708 - Psyr_0641 0.57 -1.4 729,708 - Psyr_0641 0.57 -1.4 729,896 - Psyr_0641 0.82 -1.0 729,943 + Psyr_0641 0.88 +0.6 729,977 + +0.8 729,977 + -0.4 729,978 - +0.4 729,978 - +1.5 730,117 + Psyr_0642 0.30 -0.2 730,117 + Psyr_0642 0.30 +0.3 730,206 + Psyr_0642 0.59 +0.6 730,206 + Psyr_0642 0.59 +1.2 730,206 + Psyr_0642 0.59 +0.1 730,207 - Psyr_0642 0.59 +1.2
Or see this region's nucleotide sequence