Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0727

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0726 and Psyr_0727 overlap by 4 nucleotidesPsyr_0727 and Psyr_0728 are separated by 171 nucleotides Psyr_0726: Psyr_0726 - ribosomal large subunit pseudouridine synthase D, at 830,467 to 831,429 _0726 Psyr_0727: Psyr_0727 - Protein of unknown function DUF152, at 831,426 to 832,154 _0727 Psyr_0728: Psyr_0728 - AAA ATPase, central region:Clp, N terminal:Clp, N terminal, at 832,326 to 834,890 _0728 Position (kb) 831 832 833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 830.457 kb on + strandat 830.457 kb on + strandat 830.457 kb on + strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.458 kb on - strandat 830.479 kb on - strandat 830.479 kb on - strandat 830.480 kb on + strandat 830.481 kb on - strandat 830.481 kb on - strandat 830.481 kb on - strandat 830.546 kb on + strandat 830.546 kb on + strandat 830.547 kb on - strandat 830.726 kb on - strand, within Psyr_0726at 830.970 kb on + strand, within Psyr_0726at 830.970 kb on + strand, within Psyr_0726at 830.971 kb on - strand, within Psyr_0726at 830.971 kb on - strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.974 kb on + strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 830.975 kb on - strand, within Psyr_0726at 831.134 kb on + strand, within Psyr_0726at 831.134 kb on + strand, within Psyr_0726at 831.135 kb on - strand, within Psyr_0726at 831.135 kb on - strand, within Psyr_0726at 831.135 kb on - strand, within Psyr_0726at 831.176 kb on + strand, within Psyr_0726at 831.442 kb on + strandat 831.442 kb on + strandat 831.442 kb on + strandat 831.442 kb on + strandat 831.442 kb on + strandat 831.638 kb on - strand, within Psyr_0727at 831.638 kb on - strand, within Psyr_0727at 831.646 kb on + strand, within Psyr_0727at 831.646 kb on + strand, within Psyr_0727at 831.646 kb on + strand, within Psyr_0727at 831.647 kb on - strand, within Psyr_0727at 831.647 kb on - strand, within Psyr_0727at 831.718 kb on + strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 831.719 kb on - strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.002 kb on + strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.003 kb on - strand, within Psyr_0727at 832.037 kb on + strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.038 kb on - strand, within Psyr_0727at 832.182 kb on + strandat 832.182 kb on + strandat 832.183 kb on - strandat 832.212 kb on - strandat 832.212 kb on - strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.254 kb on + strandat 832.255 kb on - strandat 832.255 kb on - strandat 832.255 kb on - strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.282 kb on + strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.283 kb on - strandat 832.310 kb on + strandat 832.350 kb on - strandat 832.354 kb on + strandat 832.354 kb on + strandat 832.354 kb on + strandat 832.355 kb on - strandat 832.355 kb on - strandat 832.360 kb on + strandat 832.361 kb on - strandat 832.361 kb on - strandat 832.483 kb on + strandat 832.483 kb on + strandat 832.483 kb on + strandat 832.483 kb on + strandat 832.484 kb on - strandat 832.484 kb on - strandat 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.815 kb on + strand, within Psyr_0728at 832.816 kb on - strand, within Psyr_0728at 832.816 kb on - strand, within Psyr_0728at 832.816 kb on - strand, within Psyr_0728at 832.816 kb on - strand, within Psyr_0728at 833.076 kb on + strand, within Psyr_0728at 833.077 kb on - strand, within Psyr_0728

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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830,457 + +0.7
830,457 + -0.6
830,457 + -0.7
830,458 - -3.0
830,458 - +1.2
830,458 - -2.4
830,458 - -0.4
830,458 - -0.8
830,479 - +0.2
830,479 - +0.2
830,480 + -0.5
830,481 - +0.2
830,481 - +1.2
830,481 - +0.1
830,546 + +0.7
830,546 + -1.2
830,547 - +0.2
830,726 - Psyr_0726 0.27 +0.2
830,970 + Psyr_0726 0.52 -2.4
830,970 + Psyr_0726 0.52 -0.3
830,971 - Psyr_0726 0.52 -1.4
830,971 - Psyr_0726 0.52 +1.1
830,974 + Psyr_0726 0.53 +0.2
830,974 + Psyr_0726 0.53 -0.6
830,974 + Psyr_0726 0.53 -0.2
830,974 + Psyr_0726 0.53 +0.2
830,975 - Psyr_0726 0.53 -0.8
830,975 - Psyr_0726 0.53 -0.2
830,975 - Psyr_0726 0.53 +0.4
830,975 - Psyr_0726 0.53 -2.6
831,134 + Psyr_0726 0.69 -0.1
831,134 + Psyr_0726 0.69 -0.4
831,135 - Psyr_0726 0.69 -2.1
831,135 - Psyr_0726 0.69 +0.2
831,135 - Psyr_0726 0.69 -1.1
831,176 + Psyr_0726 0.74 +2.0
831,442 + -0.1
831,442 + -1.5
831,442 + -0.5
831,442 + -0.4
831,442 + -0.7
831,638 - Psyr_0727 0.29 -1.4
831,638 - Psyr_0727 0.29 -1.5
831,646 + Psyr_0727 0.30 +0.7
831,646 + Psyr_0727 0.30 -0.1
831,646 + Psyr_0727 0.30 +0.5
831,647 - Psyr_0727 0.30 +1.8
831,647 - Psyr_0727 0.30 +0.6
831,718 + Psyr_0727 0.40 +0.6
831,719 - Psyr_0727 0.40 +1.6
831,719 - Psyr_0727 0.40 +1.3
831,719 - Psyr_0727 0.40 -0.4
831,719 - Psyr_0727 0.40 +0.3
832,002 + Psyr_0727 0.79 -0.4
832,002 + Psyr_0727 0.79 +0.2
832,002 + Psyr_0727 0.79 +0.6
832,002 + Psyr_0727 0.79 +1.5
832,002 + Psyr_0727 0.79 +2.5
832,003 - Psyr_0727 0.79 +1.2
832,003 - Psyr_0727 0.79 +0.2
832,003 - Psyr_0727 0.79 +0.5
832,003 - Psyr_0727 0.79 -0.3
832,003 - Psyr_0727 0.79 -0.4
832,037 + Psyr_0727 0.84 -0.2
832,038 - Psyr_0727 0.84 -0.7
832,038 - Psyr_0727 0.84 +0.2
832,038 - Psyr_0727 0.84 +0.9
832,038 - Psyr_0727 0.84 -0.8
832,182 + -0.1
832,182 + +1.2
832,183 - -0.1
832,212 - +2.5
832,212 - +1.8
832,254 + +1.0
832,254 + +2.4
832,254 + -1.2
832,254 + -1.3
832,254 + +0.2
832,255 - +0.6
832,255 - -0.2
832,255 - -1.5
832,282 + +1.9
832,282 + +0.2
832,282 + -0.1
832,282 + -0.6
832,282 + -1.2
832,283 - -0.1
832,283 - -0.4
832,283 - +0.0
832,283 - -0.1
832,283 - -0.9
832,283 - -1.2
832,283 - -0.8
832,310 + -0.4
832,350 - +0.6
832,354 + -0.6
832,354 + -0.8
832,354 + +1.6
832,355 - +3.8
832,355 - +0.0
832,360 + +3.2
832,361 - +0.6
832,361 - -1.5
832,483 + +0.4
832,483 + +1.8
832,483 + -0.5
832,483 + -0.2
832,484 - +0.8
832,484 - -1.9
832,815 + Psyr_0728 0.19 -0.7
832,815 + Psyr_0728 0.19 -0.1
832,815 + Psyr_0728 0.19 +0.0
832,815 + Psyr_0728 0.19 +0.8
832,815 + Psyr_0728 0.19 +0.4
832,815 + Psyr_0728 0.19 +1.5
832,815 + Psyr_0728 0.19 +0.6
832,815 + Psyr_0728 0.19 +0.2
832,816 - Psyr_0728 0.19 -0.8
832,816 - Psyr_0728 0.19 -2.6
832,816 - Psyr_0728 0.19 +2.5
832,816 - Psyr_0728 0.19 +0.5
833,076 + Psyr_0728 0.29 +2.9
833,077 - Psyr_0728 0.29 +1.4

Or see this region's nucleotide sequence