Strain Fitness in Pantoea sp. MT58 around IAI47_08230

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,739,645	+		IAI47_08225	0.14	-0.2
1,739,645	+		IAI47_08225	0.14	-0.3
1,739,645	+		IAI47_08225	0.14	-0.0
1,739,645	+		IAI47_08225	0.14	+0.7
1,739,645	+		IAI47_08225	0.14	-1.6
1,739,645	+		IAI47_08225	0.14	-0.4
1,739,645	+		IAI47_08225	0.14	+0.4
1,739,645	+		IAI47_08225	0.14	-0.0
1,739,646	-		IAI47_08225	0.14	-2.0
1,739,646	-		IAI47_08225	0.14	+0.2
1,739,646	-		IAI47_08225	0.14	-1.1
1,739,681	+		IAI47_08225	0.19	-0.8
1,739,711	+		IAI47_08225	0.23	+0.1
1,739,711	+		IAI47_08225	0.23	+0.4
1,739,712	-		IAI47_08225	0.23	+1.0
1,739,730	+		IAI47_08225	0.25	-0.5
1,739,731	-		IAI47_08225	0.25	-1.5
1,739,735	+		IAI47_08225	0.26	+1.1
1,739,735	+		IAI47_08225	0.26	+1.2
1,739,735	+		IAI47_08225	0.26	+0.7
1,739,736	-		IAI47_08225	0.26	-1.5
1,739,736	-		IAI47_08225	0.26	-2.2
1,739,743	+		IAI47_08225	0.27	-0.6
1,739,744	-		IAI47_08225	0.27	-0.5
1,739,744	-		IAI47_08225	0.27	-0.8
1,739,744	-		IAI47_08225	0.27	-0.6
1,739,789	+		IAI47_08225	0.33	-0.5
1,739,831	+		IAI47_08225	0.38	-0.7
1,739,834	+		IAI47_08225	0.38	-0.0
1,739,835	-		IAI47_08225	0.38	+0.4
1,739,835	-		IAI47_08225	0.38	-1.2
1,739,853	-		IAI47_08225	0.41	-0.0
1,739,869	+		IAI47_08225	0.43	+0.9
1,739,869	+		IAI47_08225	0.43	-0.2
1,739,870	-		IAI47_08225	0.43	-1.9
1,739,870	-		IAI47_08225	0.43	-1.6
1,739,910	-		IAI47_08225	0.48	-0.7
1,739,931	+		IAI47_08225	0.51	+1.2
1,739,931	+		IAI47_08225	0.51	+2.2
1,739,946	+		IAI47_08225	0.52	-1.7
1,739,946	+		IAI47_08225	0.52	+0.4
1,739,981	+		IAI47_08225	0.57	+0.4
1,739,981	+		IAI47_08225	0.57	+1.4
1,739,981	+		IAI47_08225	0.57	+1.3
1,739,982	-		IAI47_08225	0.57	+0.0
1,739,982	-		IAI47_08225	0.57	-0.5
1,739,988	+		IAI47_08225	0.58	+0.8
1,739,988	+		IAI47_08225	0.58	-1.0
1,739,988	+		IAI47_08225	0.58	+0.5
1,739,989	-		IAI47_08225	0.58	-1.6
1,740,016	+		IAI47_08225	0.61	-0.3
1,740,036	+		IAI47_08225	0.64	+2.0
1,740,164	+		IAI47_08225	0.80	+1.0
1,740,165	-		IAI47_08225	0.80	-0.8
1,740,167	+		IAI47_08225	0.80	+0.8
1,740,168	-		IAI47_08225	0.81	-2.2
1,740,168	-		IAI47_08225	0.81	-2.0
1,740,168	-		IAI47_08225	0.81	-1.1
1,740,168	-		IAI47_08225	0.81	-2.1
1,740,312	+				+1.0
1,740,312	+				+0.2
1,740,312	+				+1.5
1,740,313	-				-0.1
1,740,313	-				+0.1
1,740,313	-				-1.1
1,740,314	+				-0.4
1,740,314	+				+0.2
1,740,314	+				+0.0
1,740,314	+				-0.4
1,740,314	+				-0.2
1,740,314	+				+1.7
1,740,314	+				+0.8
1,740,314	+				+1.0
1,740,315	-				-0.6
1,740,315	-				-1.7
1,740,315	-				+0.2
1,740,315	-				+0.4
1,740,318	+				+0.9
1,740,318	+				-0.2
1,740,319	-				-1.2
1,740,319	-				-0.2
1,740,333	+				-0.0
1,740,333	+				-1.4
1,740,334	-				-1.1
1,740,334	-				+0.4
1,740,334	-				-1.2
1,740,410	-				-1.3
1,740,413	-				-0.1
1,740,457	+				+0.2
1,740,470	-				+0.6
1,740,516	-				-2.1
1,740,539	-				-1.1
1,740,585	-				+1.6
1,740,589	+				+0.2
1,740,590	-				+0.2
1,740,590	-				+2.0
1,740,590	-				-1.5
1,740,595	-				-1.5
1,740,646	+				-2.1
1,740,647	-				+1.0
1,740,666	+				+4.0
1,740,667	-				-0.8
1,740,682	+				-0.0
1,740,682	+				+1.7
1,740,706	+				+2.8
1,740,738	+				-1.5
1,740,738	+				+3.0
1,740,796	+		IAI47_08230	0.12	-0.6
1,740,892	-		IAI47_08230	0.17	-0.5
1,740,901	+		IAI47_08230	0.18	+0.2
1,740,902	-		IAI47_08230	0.18	-0.8
1,740,902	-		IAI47_08230	0.18	-0.9
1,740,908	+		IAI47_08230	0.18	+0.1
1,740,909	-		IAI47_08230	0.18	-1.2
1,740,910	+		IAI47_08230	0.18	-1.1
1,740,911	-		IAI47_08230	0.18	-1.0
1,740,911	-		IAI47_08230	0.18	-1.9
1,740,928	+		IAI47_08230	0.19	-0.4
1,740,928	+		IAI47_08230	0.19	+0.2
1,740,964	+		IAI47_08230	0.21	-0.5
1,740,965	-		IAI47_08230	0.21	-1.3
1,740,974	-		IAI47_08230	0.21	+0.4
1,740,988	+		IAI47_08230	0.22	-0.2
1,740,989	-		IAI47_08230	0.22	+0.5
1,740,999	+		IAI47_08230	0.23	+1.6
1,741,000	-		IAI47_08230	0.23	-0.4
1,741,000	-		IAI47_08230	0.23	-0.2
1,741,041	+		IAI47_08230	0.25	+0.3
1,741,042	-		IAI47_08230	0.25	-0.6
1,741,042	-		IAI47_08230	0.25	-1.6
1,741,042	-		IAI47_08230	0.25	-0.7
1,741,045	+		IAI47_08230	0.25	-0.8
1,741,073	-		IAI47_08230	0.26	-2.4
1,741,078	+		IAI47_08230	0.27	+3.0
1,741,088	-		IAI47_08230	0.27	-0.7
1,741,088	-		IAI47_08230	0.27	-0.8
1,741,088	-		IAI47_08230	0.27	-0.4
1,741,114	-		IAI47_08230	0.29	-0.5
1,741,117	+		IAI47_08230	0.29	-1.3
1,741,117	+		IAI47_08230	0.29	-1.7
1,741,117	+		IAI47_08230	0.29	-1.6
1,741,117	+		IAI47_08230	0.29	+0.2
1,741,118	-		IAI47_08230	0.29	+0.5
1,741,118	-		IAI47_08230	0.29	-1.3
1,741,118	-		IAI47_08230	0.29	-0.6
1,741,202	+		IAI47_08230	0.33	-1.4
1,741,202	+		IAI47_08230	0.33	-0.7
1,741,202	+		IAI47_08230	0.33	-0.0
1,741,202	+		IAI47_08230	0.33	-0.6
1,741,203	-		IAI47_08230	0.33	-1.6
1,741,203	-		IAI47_08230	0.33	-2.6
1,741,203	-		IAI47_08230	0.33	-0.1
1,741,204	+		IAI47_08230	0.33	-1.2
1,741,204	+		IAI47_08230	0.33	+0.8
1,741,204	+		IAI47_08230	0.33	-0.6
1,741,204	+		IAI47_08230	0.33	-2.8
1,741,205	-		IAI47_08230	0.33	+0.6
1,741,219	-		IAI47_08230	0.34	-0.2
1,741,266	+		IAI47_08230	0.37	+2.5
1,741,266	+		IAI47_08230	0.37	-2.1
1,741,304	-		IAI47_08230	0.39	-0.9
1,741,312	-		IAI47_08230	0.39	-0.2
1,741,312	-		IAI47_08230	0.39	-1.0
1,741,352	-		IAI47_08230	0.41	+1.2
1,741,397	+		IAI47_08230	0.43	+0.7
1,741,398	-		IAI47_08230	0.43	-0.1
1,741,399	+		IAI47_08230	0.44	+0.2
1,741,399	+		IAI47_08230	0.44	-0.4
1,741,400	-		IAI47_08230	0.44	+0.4
1,741,400	-		IAI47_08230	0.44	-2.3
1,741,461	+		IAI47_08230	0.47	+0.2
1,741,461	+		IAI47_08230	0.47	-0.4
1,741,462	-		IAI47_08230	0.47	-0.5
1,741,462	-		IAI47_08230	0.47	-2.6
1,741,462	-		IAI47_08230	0.47	+0.3
1,741,492	+		IAI47_08230	0.48	+1.4
1,741,492	+		IAI47_08230	0.48	-0.5
1,741,492	+		IAI47_08230	0.48	-1.4
1,741,492	+		IAI47_08230	0.48	-0.1
1,741,492	+		IAI47_08230	0.48	+1.5
1,741,493	-		IAI47_08230	0.48	+0.6
1,741,493	-		IAI47_08230	0.48	+0.6
1,741,493	-		IAI47_08230	0.48	-0.5
1,741,547	+		IAI47_08230	0.51	-1.6
1,741,548	-		IAI47_08230	0.51	-0.2
1,741,587	+		IAI47_08230	0.53	+1.1
1,741,587	+		IAI47_08230	0.53	+1.2
1,741,587	+		IAI47_08230	0.53	-1.2
1,741,587	+		IAI47_08230	0.53	-1.4
1,741,587	+		IAI47_08230	0.53	+0.8
1,741,587	+		IAI47_08230	0.53	-1.8
1,741,588	-		IAI47_08230	0.53	+0.6
1,741,588	-		IAI47_08230	0.53	+1.7
1,741,588	-		IAI47_08230	0.53	-0.4
1,741,588	-		IAI47_08230	0.53	-0.0
1,741,588	-		IAI47_08230	0.53	-2.1
1,741,620	+		IAI47_08230	0.55	-0.3
1,741,683	-		IAI47_08230	0.58	+0.4
1,741,683	-		IAI47_08230	0.58	-1.4
1,741,703	-		IAI47_08230	0.59	-0.3
1,741,714	+		IAI47_08230	0.60	-0.0
1,741,726	+		IAI47_08230	0.61	-1.9
1,741,727	-		IAI47_08230	0.61	-0.9
1,741,775	+		IAI47_08230	0.63	-0.4
1,741,775	+		IAI47_08230	0.63	-0.3
1,741,776	-		IAI47_08230	0.63	+1.0
1,741,778	+		IAI47_08230	0.63	+2.0
1,741,778	+		IAI47_08230	0.63	-0.4
1,741,779	-		IAI47_08230	0.63	+0.6
1,741,784	+		IAI47_08230	0.64	+1.6
1,741,785	-		IAI47_08230	0.64	-1.7
1,741,807	+		IAI47_08230	0.65	+0.3
1,741,808	-		IAI47_08230	0.65	-1.4
1,741,808	-		IAI47_08230	0.65	+3.0
1,741,850	-		IAI47_08230	0.67	-0.9
1,741,850	-		IAI47_08230	0.67	-0.5
1,741,882	-		IAI47_08230	0.69	-1.4
1,741,882	-		IAI47_08230	0.69	-1.9
1,741,882	-		IAI47_08230	0.69	-0.2
1,741,882	-		IAI47_08230	0.69	+0.4
1,741,882	-		IAI47_08230	0.69	-1.0
1,741,912	-		IAI47_08230	0.70	-0.0
1,741,912	-		IAI47_08230	0.70	-0.0
1,742,005	+		IAI47_08230	0.75	+0.4
1,742,005	+		IAI47_08230	0.75	-1.1
1,742,005	+		IAI47_08230	0.75	+0.6
1,742,005	+		IAI47_08230	0.75	+1.6
1,742,006	-		IAI47_08230	0.75	+0.2
1,742,012	-		IAI47_08230	0.76	-0.4
1,742,012	-		IAI47_08230	0.76	+0.6
1,742,019	+		IAI47_08230	0.76	-0.1
1,742,020	-		IAI47_08230	0.76	+1.4
1,742,051	-		IAI47_08230	0.78	-0.0
1,742,051	-		IAI47_08230	0.78	+0.6
1,742,131	+		IAI47_08230	0.82	-1.8
1,742,131	+		IAI47_08230	0.82	+0.5
1,742,131	+		IAI47_08230	0.82	+1.6
1,742,132	-		IAI47_08230	0.82	+2.0
1,742,132	-		IAI47_08230	0.82	+0.5
1,742,179	-		IAI47_08230	0.84	-0.8
1,742,188	+		IAI47_08230	0.85	-1.4
1,742,189	-		IAI47_08230	0.85	-2.4
1,742,189	-		IAI47_08230	0.85	-0.3
1,742,189	-		IAI47_08230	0.85	+0.6
1,742,224	+		IAI47_08230	0.87	+1.4
1,742,225	-		IAI47_08230	0.87	-1.1
1,742,262	+		IAI47_08230	0.89	-0.9
1,742,263	-		IAI47_08230	0.89	-1.4
1,742,263	-		IAI47_08230	0.89	-0.4
1,742,281	+		IAI47_08230	0.90	-0.1
1,742,281	+		IAI47_08230	0.90	+2.4
1,742,282	-		IAI47_08230	0.90	+1.2
1,742,282	-		IAI47_08230	0.90	+0.2
1,742,291	-				+1.0
1,742,336	+				+0.2
1,742,336	+				-0.0
1,742,337	-				-0.4
1,742,337	-				-0.4
1,742,337	-				-1.0
1,742,368	+				+0.4
1,742,380	+				+3.8
1,742,380	+				+0.2
1,742,386	-				-1.5
1,742,393	+				+1.3
1,742,393	+				-2.0
1,742,394	-				-0.6
1,742,396	-				-0.3
1,742,437	+				+0.7
1,742,437	+				+1.4
1,742,437	+				+0.9
1,742,437	+				+1.7
1,742,438	-				+1.2
1,742,438	-				-1.1
1,742,438	-				-0.0
1,742,502	+				+1.4
1,742,502	+				+0.6
1,742,502	+				-0.1
1,742,502	+				-1.2
1,742,502	+				+1.1
1,742,502	+				+0.4
1,742,503	-				+0.2
1,742,503	-				-1.5
1,742,509	+				-1.6
1,742,509	+				+1.4
1,742,509	+				-0.5
1,742,509	+				-1.0
1,742,509	+				+1.0
1,742,510	-				-0.4
1,742,510	-				-1.2
1,742,510	-				+0.9
1,742,510	-				+0.7
1,742,510	-				-1.3
1,742,510	-				-3.2
1,742,510	-				+0.4
1,742,510	-				+3.3
1,742,520	-				-1.6
1,742,545	+				+0.2
1,742,545	+				+0.2
1,742,546	-				+0.3
1,742,571	+				-0.5
1,742,571	+				+0.7
1,742,571	+				+1.6
1,742,583	+				+0.8
1,742,583	+				+0.2
1,742,583	+				+0.9
1,742,583	+				+1.7
1,742,583	+				+0.3
1,742,583	+				+1.0
1,742,584	-				-1.5
1,742,584	-				+0.3
1,742,610	+				-0.6
1,742,611	-				-0.0
1,742,625	+				+0.6
1,742,625	+				+0.9
1,742,626	-				-1.5
1,742,637	+				-0.4
1,742,637	+				+0.2
1,742,637	+				-0.3
1,742,638	-				+1.3
1,742,680	+		IAI47_08235	0.11	+2.4
1,742,681	-		IAI47_08235	0.11	+0.1
1,742,691	+		IAI47_08235	0.12	-0.2
1,742,692	-		IAI47_08235	0.12	-0.2
1,742,698	+		IAI47_08235	0.12	+0.5
1,742,713	+		IAI47_08235	0.14	+0.2
1,742,713	+		IAI47_08235	0.14	+0.4
1,742,714	-		IAI47_08235	0.14	-2.5
1,742,714	-		IAI47_08235	0.14	-2.4
1,742,737	+		IAI47_08235	0.16	+2.0
1,742,737	+		IAI47_08235	0.16	+1.6
1,742,738	-		IAI47_08235	0.16	-1.1
1,742,738	-		IAI47_08235	0.16	-0.4
1,742,740	+		IAI47_08235	0.17	-0.0
1,742,740	+		IAI47_08235	0.17	-0.7
1,742,740	+		IAI47_08235	0.17	+1.1
1,742,740	+		IAI47_08235	0.17	-0.9
1,742,743	+		IAI47_08235	0.17	+0.4
1,742,743	+		IAI47_08235	0.17	+1.2
1,742,743	+		IAI47_08235	0.17	+0.4
1,742,743	+		IAI47_08235	0.17	-1.3
1,742,743	+		IAI47_08235	0.17	-0.1
1,742,744	-		IAI47_08235	0.17	-0.4
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