Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0601

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0599 and Psyr_0600 overlap by 4 nucleotidesPsyr_0600 and Psyr_0601 overlap by 4 nucleotidesPsyr_0601 and Psyr_0602 are separated by 720 nucleotides Psyr_0599: Psyr_0599 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 687,919 to 689,232 _0599 Psyr_0600: Psyr_0600 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 689,229 to 690,104 _0600 Psyr_0601: Psyr_0601 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 690,101 to 690,817 _0601 Psyr_0602: Psyr_0602 - Short-chain dehydrogenase/reductase SDR, at 691,538 to 692,302 _0602 Position (kb) 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 689.187 kb on - strandat 689.394 kb on + strand, within Psyr_0600at 689.394 kb on + strand, within Psyr_0600at 689.394 kb on + strand, within Psyr_0600at 689.394 kb on + strand, within Psyr_0600at 689.395 kb on - strand, within Psyr_0600at 689.458 kb on + strand, within Psyr_0600at 689.520 kb on + strand, within Psyr_0600at 689.520 kb on + strand, within Psyr_0600at 689.520 kb on + strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.521 kb on - strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.523 kb on + strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.524 kb on - strand, within Psyr_0600at 689.678 kb on + strand, within Psyr_0600at 689.727 kb on + strand, within Psyr_0600at 689.727 kb on + strand, within Psyr_0600at 689.727 kb on + strand, within Psyr_0600at 689.728 kb on - strand, within Psyr_0600at 689.990 kb on + strand, within Psyr_0600at 690.048 kb on - strandat 690.073 kb on - strandat 690.100 kb on + strandat 690.100 kb on + strandat 690.101 kb on - strandat 690.143 kb on + strandat 690.290 kb on + strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.291 kb on - strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.326 kb on + strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.327 kb on - strand, within Psyr_0601at 690.669 kb on + strand, within Psyr_0601at 690.669 kb on + strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.670 kb on - strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.722 kb on + strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.723 kb on - strand, within Psyr_0601at 690.778 kb on - strandat 690.778 kb on - strandat 690.789 kb on + strandat 690.918 kb on - strandat 690.929 kb on - strandat 690.999 kb on + strandat 690.999 kb on + strandat 690.999 kb on + strandat 691.011 kb on - strandat 691.014 kb on + strandat 691.015 kb on - strandat 691.164 kb on + strandat 691.165 kb on - strandat 691.165 kb on - strandat 691.433 kb on + strandat 691.434 kb on - strandat 691.434 kb on - strandat 691.494 kb on + strandat 691.494 kb on + strandat 691.494 kb on + strandat 691.495 kb on - strandat 691.495 kb on - strandat 691.551 kb on + strandat 691.551 kb on + strandat 691.551 kb on + strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.552 kb on - strandat 691.696 kb on + strand, within Psyr_0602at 691.696 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.713 kb on + strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602at 691.714 kb on - strand, within Psyr_0602

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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689,187 - +0.8
689,394 + Psyr_0600 0.19 -0.6
689,394 + Psyr_0600 0.19 +0.7
689,394 + Psyr_0600 0.19 -1.0
689,394 + Psyr_0600 0.19 -0.9
689,395 - Psyr_0600 0.19 +1.2
689,458 + Psyr_0600 0.26 -0.7
689,520 + Psyr_0600 0.33 -1.4
689,520 + Psyr_0600 0.33 -1.7
689,520 + Psyr_0600 0.33 -0.2
689,521 - Psyr_0600 0.33 +0.1
689,521 - Psyr_0600 0.33 -2.0
689,521 - Psyr_0600 0.33 +1.3
689,521 - Psyr_0600 0.33 -1.9
689,521 - Psyr_0600 0.33 -1.2
689,521 - Psyr_0600 0.33 -0.5
689,523 + Psyr_0600 0.34 -2.4
689,523 + Psyr_0600 0.34 +1.6
689,523 + Psyr_0600 0.34 +0.6
689,523 + Psyr_0600 0.34 +0.1
689,523 + Psyr_0600 0.34 -1.2
689,523 + Psyr_0600 0.34 +0.8
689,523 + Psyr_0600 0.34 -0.4
689,523 + Psyr_0600 0.34 +0.6
689,524 - Psyr_0600 0.34 -1.9
689,524 - Psyr_0600 0.34 +1.6
689,524 - Psyr_0600 0.34 -0.9
689,524 - Psyr_0600 0.34 +0.6
689,678 + Psyr_0600 0.51 -0.4
689,727 + Psyr_0600 0.57 +1.6
689,727 + Psyr_0600 0.57 -0.0
689,727 + Psyr_0600 0.57 -0.4
689,728 - Psyr_0600 0.57 +0.2
689,990 + Psyr_0600 0.87 +1.2
690,048 - -1.4
690,073 - -0.8
690,100 + -0.4
690,100 + -1.2
690,101 - -2.4
690,143 + -0.7
690,290 + Psyr_0601 0.26 -1.8
690,291 - Psyr_0601 0.26 -0.1
690,291 - Psyr_0601 0.26 +0.2
690,291 - Psyr_0601 0.26 -0.5
690,291 - Psyr_0601 0.26 -0.3
690,326 + Psyr_0601 0.31 -1.8
690,326 + Psyr_0601 0.31 -0.8
690,326 + Psyr_0601 0.31 -0.4
690,326 + Psyr_0601 0.31 -0.4
690,327 - Psyr_0601 0.32 +1.0
690,327 - Psyr_0601 0.32 +1.1
690,327 - Psyr_0601 0.32 -1.2
690,327 - Psyr_0601 0.32 +0.1
690,327 - Psyr_0601 0.32 -0.1
690,669 + Psyr_0601 0.79 -1.4
690,669 + Psyr_0601 0.79 -1.6
690,670 - Psyr_0601 0.79 -1.0
690,670 - Psyr_0601 0.79 +1.0
690,670 - Psyr_0601 0.79 -1.8
690,722 + Psyr_0601 0.87 +0.6
690,722 + Psyr_0601 0.87 -1.0
690,722 + Psyr_0601 0.87 -0.4
690,722 + Psyr_0601 0.87 +0.6
690,723 - Psyr_0601 0.87 -3.1
690,723 - Psyr_0601 0.87 +0.2
690,723 - Psyr_0601 0.87 +1.8
690,778 - +0.7
690,778 - -0.9
690,789 + +1.3
690,918 - -0.1
690,929 - +1.8
690,999 + +1.0
690,999 + +0.0
690,999 + +1.0
691,011 - -0.3
691,014 + -1.0
691,015 - +0.3
691,164 + +0.8
691,165 - +0.6
691,165 - -0.3
691,433 + +0.5
691,434 - +0.8
691,434 - +1.0
691,494 + +0.8
691,494 + +2.5
691,494 + +0.6
691,495 - -1.2
691,495 - -0.8
691,551 + -1.0
691,551 + +0.2
691,551 + -0.9
691,552 - +0.2
691,552 - +0.4
691,552 - -1.6
691,552 - -1.4
691,552 - +0.2
691,552 - +0.2
691,552 - +0.2
691,552 - +0.8
691,696 + Psyr_0602 0.21 -0.8
691,696 + Psyr_0602 0.21 -1.8
691,713 + Psyr_0602 0.23 -1.7
691,713 + Psyr_0602 0.23 -1.4
691,713 + Psyr_0602 0.23 +0.9
691,713 + Psyr_0602 0.23 -1.4
691,713 + Psyr_0602 0.23 -0.8
691,713 + Psyr_0602 0.23 -1.9
691,714 - Psyr_0602 0.23 -1.8
691,714 - Psyr_0602 0.23 +0.6
691,714 - Psyr_0602 0.23 -0.5
691,714 - Psyr_0602 0.23 -1.8
691,714 - Psyr_0602 0.23 -0.9
691,714 - Psyr_0602 0.23 -1.4

Or see this region's nucleotide sequence